CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035321_P001	Maize	plastid	89.8	92.31
TraesCS5B01G108300.1	Wheat	plastid	76.87	73.86
TraesCS5D01G115900.1	Wheat	plastid	76.19	73.2
HORVU5Hr1G028290.1	Barley	plastid	75.51	72.55
TraesCS5A01G105100.1	Wheat	plastid	76.19	72.26
CDX76269	Canola	cytosol	34.69	57.95
GSMUA_Achr10P...	Banana	plastid	47.62	49.65
PGSC0003DMT400025339	Potato	plastid	45.58	48.91
PGSC0003DMT400059663	Potato	plastid	45.58	48.55
PGSC0003DMT400066526	Potato	plastid	47.62	48.28
VIT_03s0091g00430.t01	Wine grape	plastid	46.94	47.59
Solyc01g107330.2.1	Tomato	plastid	46.94	47.26
EER90846	Sorghum	plastid	45.58	46.85
Os12t0507500-00	Rice	plastid	55.78	45.56
CDX75421	Canola	plastid	42.18	44.93
Bra011519.1-P	Field mustard	plastid	42.18	44.93
EES06225	Sorghum	mitochondrion	39.46	44.27
CDY69869	Canola	plastid	40.14	43.07
CDX72477	Canola	plastid	39.46	41.73
AT2G14880.1	Thale cress	plastid	39.46	41.13
Bra034617.1-P	Field mustard	cytosol	23.13	40.48
CDY45303	Canola	plastid	38.78	40.43
Bra017644.1-P	Field mustard	plastid	38.1	39.72
KRH77941	Soybean	nucleus	36.73	38.85
KRH27569	Soybean	nucleus	38.78	38.51
AT4G34290.1	Thale cress	plastid	37.41	38.19
EER93399	Sorghum	nucleus	27.89	12.58
KXG27277	Sorghum	cytosol	27.89	10.38
KXG25652	Sorghum	nucleus	29.25	10.05

Protein Annotations

EnsemblPlants:EES17082	EnsemblPlantsGene:SORBI_3008G107800	EntrezGene:8065846	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF21	PFAM:PF02201	ProteinID:EES17082	ProteinID:EES17082.1	RefSeq:XP_002443244.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0001A884D9	UniProt:C5YP21	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr8:-:50616202..50620205

Molecular Weight (calculated)

15592.2 Da

IEP (calculated)

11.165

GRAVY (calculated)

-0.157

Length

147 amino acids

Sequence
(BLAST)

001: MSATIRSGEL LACPVALRRA PPVAVSVVSV RTRARAVAVA VRAEATAEGV GKGGKKAAAA GKKRPASGIT KPKPISPELR EFVGGAPELP RTEAIKLVWA
101: HIKGNNLQDP NDKKIIICDD KLKKIFGGRD RVGFLEISGL LNPHFQK

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.