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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra011519.1-P Field mustard plastid 99.28 99.28
CDY69869 Canola plastid 94.93 95.62
CDX76269 Canola cytosol 57.97 90.91
CDX72477 Canola plastid 87.68 87.05
CDY45303 Canola plastid 87.68 85.82
AT4G34290.1 Thale cress plastid 84.06 80.56
AT2G14880.1 Thale cress plastid 75.36 73.76
VIT_03s0091g00430.t01 Wine grape plastid 66.67 63.45
PGSC0003DMT400025339 Potato plastid 61.59 62.04
PGSC0003DMT400066526 Potato plastid 64.49 61.38
Solyc01g107330.2.1 Tomato plastid 63.77 60.27
PGSC0003DMT400059663 Potato plastid 60.14 60.14
GSMUA_Achr10P... Banana plastid 55.07 53.9
KRH77941 Soybean nucleus 53.62 53.24
KRH27569 Soybean nucleus 54.35 50.68
GSMUA_Achr7P26330_001 Banana plastid 50.0 49.29
GSMUA_Achr3P30180_001 Banana plastid 50.0 49.29
EES17082 Sorghum plastid 44.93 42.18
Zm00001d035321_P001 Maize plastid 43.48 41.96
CDY49157 Canola mitochondrion 28.26 41.94
CDY12300 Canola mitochondrion 28.26 41.94
HORVU5Hr1G028290.1 Barley plastid 46.38 41.83
TraesCS5D01G115900.1 Wheat plastid 46.38 41.83
TraesCS5B01G108300.1 Wheat plastid 46.38 41.83
TraesCS5A01G105100.1 Wheat plastid 45.65 40.65
CDY47689 Canola mitochondrion 32.61 38.46
CDY50950 Canola mitochondrion 31.88 37.93
CDY51761 Canola mitochondrion 35.51 36.57
CDY50651 Canola plastid 34.78 32.88
Os12t0507500-00 Rice plastid 31.16 23.89
CDY27449 Canola nucleus 32.61 13.89
CDX76378 Canola cytosol 32.61 13.2
CDX79150 Canola nucleus 33.33 13.14
CDX98747 Canola nucleus 34.06 12.88
CDX94096 Canola nucleus 34.06 12.6
CDX92300 Canola nucleus 25.36 7.74
CDX99270 Canola nucleus 25.36 7.54
Protein Annotations
EnsemblPlants:CDX75421EnsemblPlantsGene:GSBRNA2T00121309001Gene3D:1.10.245.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR036885InterPro:SWIB_MDM2_dom_sfInterPro:SWIB_MDM2_domainInterPro:SWIB_domainPANTHER:PTHR13844PANTHER:PTHR13844:SF8
PFAM:PF02201ProteinID:AID60143.1ProteinID:CDX75421ProteinID:CDX75421.1SEG:segSMART:SM00151
SUPFAM:SSF47592UniParc:UPI0004A88ADAUniProt:A0A068F499MapMan:35.2::
Description
BnaA01g02810DBnaA01g02810D protein [Source:UniProtKB/TrEMBL;Acc:A0A068F499]
Coordinates
chrLK031804:+:1028956..1030109
Molecular Weight (calculated)
15349.0 Da
IEP (calculated)
10.667
GRAVY (calculated)
-0.159
Length
138 amino acids
Sequence
(BLAST)
001: MALSTGIFST FLCVKTVTLR SSPFLRVSPP HPANLRMVRA VTSATAASSE PSATKTREPR GIMKPRPVSP EMQDVVGEPV IPRTQALKRI WAYIKEHDLQ
101: DPQDKKVIIC DEKLKKIFAG KDRVGFLEIA KLIGPHFL
Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)
001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
Arabidopsis Description
SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.