Factsheet for PGSC0003DMT400059663

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025339	Potato	plastid	97.1	97.81
PGSC0003DMT400066526	Potato	plastid	73.91	70.34
CDX76269	Canola	cytosol	43.48	68.18
VIT_03s0091g00430.t01	Wine grape	plastid	65.94	62.76
CDY69869	Canola	plastid	60.14	60.58
Bra011519.1-P	Field mustard	plastid	60.14	60.14
CDX75421	Canola	plastid	60.14	60.14
CDY45303	Canola	plastid	60.87	59.57
CDX72477	Canola	plastid	59.42	58.99
AT2G14880.1	Thale cress	plastid	60.14	58.87
Bra017644.1-P	Field mustard	plastid	59.42	58.16
GSMUA_Achr10P...	Banana	plastid	59.42	58.16
AT4G34290.1	Thale cress	plastid	60.14	57.64
KRH77941	Soybean	nucleus	50.0	49.64
GSMUA_Achr3P30180_001	Banana	plastid	50.0	49.29
GSMUA_Achr7P26330_001	Banana	plastid	49.28	48.57
KRH27569	Soybean	nucleus	51.45	47.97
Bra034617.1-P	Field mustard	cytosol	28.99	47.62
EES17082	Sorghum	plastid	48.55	45.58
PGSC0003DMT400047544	Potato	plastid	39.13	44.26
TraesCS5B01G108300.1	Wheat	plastid	48.55	43.79
TraesCS5D01G115900.1	Wheat	plastid	48.55	43.79
PGSC0003DMT400004968	Potato	plastid	39.13	43.55
Zm00001d035321_P001	Maize	plastid	44.93	43.36
HORVU5Hr1G028290.1	Barley	plastid	47.83	43.14
TraesCS5A01G105100.1	Wheat	plastid	47.83	42.58
Os12t0507500-00	Rice	plastid	32.61	25.0
PGSC0003DMT400066349	Potato	cytosol	28.26	11.61
PGSC0003DMT400001975	Potato	nucleus	24.64	11.49
PGSC0003DMT400034549	Potato	cytosol	28.26	10.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400059663	EnsemblPlantsGene:PGSC0003DMG400023191	EntrezGene:102582026	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	PGSC:PGSC0003DMG400023191	RefSeq:XP_006361626.1	SEG:seg	SignalP:SignalP-noTM
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI00029560BC	UniProt:M1C4J8	MapMan:35.2	:

Description

Brg-1 associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023191]

Coordinates

chr12:+:54839596..54840231

Molecular Weight (calculated)

15015.5 Da

IEP (calculated)

10.973

GRAVY (calculated)

-0.111

Length

138 amino acids

Sequence
(BLAST)

001: MAVSLGLFSA LSTVQTALFL KSSSSSSSSV RLAGNLRVAT FAGSAKPATT EPKKREPRGI MKPGRVSPEM QAFLGGLPEI PRTQALKFIW AHIKQHNLQD
101: PEDKKVIICD DKLKKIFGGR DRVGFLEIAG LISPHFLK

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.