Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g108290.2.1 | Tomato | nucleus | 93.45 | 94.29 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 52.68 | 56.01 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 20.54 | 55.2 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 10.42 | 54.69 |
| PGSC0003DMT400001975 | Potato | nucleus | 39.58 | 44.93 |
| PGSC0003DMT400047544 | Potato | plastid | 12.8 | 35.25 |
| PGSC0003DMT400025339 | Potato | plastid | 11.61 | 28.47 |
| PGSC0003DMT400059663 | Potato | plastid | 11.61 | 28.26 |
| PGSC0003DMT400004968 | Potato | plastid | 10.42 | 28.23 |
| PGSC0003DMT400034549 | Potato | cytosol | 30.36 | 28.1 |
| PGSC0003DMT400066526 | Potato | plastid | 11.61 | 26.9 |
Protein Annotations
| Gene3D:1.10.245.10 | EntrezGene:102599905 | MapMan:35.2 | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR036885 | UniProt:M1CFF0 | PFAM:PF02201 | PFAM:PF08766 | EnsemblPlantsGene:PGSC0003DMG400025800 |
| PGSC:PGSC0003DMG400025800 | EnsemblPlants:PGSC0003DMT400066349 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 | SMART:SM00151 | SUPFAM:SSF109715 |
| SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI0002957B28 | RefSeq:XP_006346438.1 |
| SEG:seg | : | : | : | : | : |
Description
Upstream activation factor subunit UAF30 [Source:PGSC_GENE;Acc:PGSC0003DMG400025800]
Coordinates
chr1:+:84708831..84713274
Molecular Weight (calculated)
38558.0 Da
IEP (calculated)
5.920
GRAVY (calculated)
-0.833
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDSVLVDR LREILRVSDL EIATAGTVRR RLEEELGVDL LDRKVFIRDQ IDLFLRIQVE ETPKNDVHEA ENGKEGENDD SCSQEEQEEE QVKEDENGDS
101: CSQEEEVGED KSATRSKKKA RRSEKMNGEA KKKGGFNKPC ALSPQLQKLV GEPELGRPEV VKKIWAYIRE KNLQNPENKR KILCDEVLSG IFQVKSIDMF
201: QMNKVLSKHI WPLNEENGTQ VKTSVKRRLP KKGREEALDE PKQKEKRQKG GGFGFLAPVQ LSDALVKFLG IGENALPRAD VIKRIWQYIK ENELQDPSDK
301: KTIICDERLK ELFQVDSFHG FTVTKLLTAH FIKRED
101: CSQEEEVGED KSATRSKKKA RRSEKMNGEA KKKGGFNKPC ALSPQLQKLV GEPELGRPEV VKKIWAYIRE KNLQNPENKR KILCDEVLSG IFQVKSIDMF
201: QMNKVLSKHI WPLNEENGTQ VKTSVKRRLP KKGREEALDE PKQKEKRQKG GGFGFLAPVQ LSDALVKFLG IGENALPRAD VIKRIWQYIK ENELQDPSDK
301: KTIICDERLK ELFQVDSFHG FTVTKLLTAH FIKRED
001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
Arabidopsis Description
At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.