Factsheet for GSMUA_Achr4P28200_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13370_001	Banana	cytosol	14.56	71.88
KRH76945	Soybean	nucleus	64.87	60.83
EER93399	Sorghum	nucleus	62.03	60.12
KRH28515	Soybean	nucleus	64.87	59.25
VIT_07s0197g00070.t01	Wine grape	nucleus	54.11	57.38
TraesCS5D01G411700.1	Wheat	nucleus	61.39	57.06
TraesCS5A01G401500.2	Wheat	nucleus	61.08	56.43
Zm00001d034159_P002	Maize	cytosol	45.89	55.77
TraesCS5B01G406200.2	Wheat	nucleus	61.71	53.57
Solyc01g108290.2.1	Tomato	nucleus	56.01	53.15
VIT_03s0063g01070.t01	Wine grape	nucleus	20.89	52.8
PGSC0003DMT400066349	Potato	cytosol	56.01	52.68
Zm00001d013204_P001	Maize	nucleus	56.33	46.35
HORVU5Hr1G097590.1	Barley	nucleus	47.15	41.74
GSMUA_AchrUn_...	Banana	cytosol	8.86	40.0
CDX92300	Canola	nucleus	55.38	38.72
Bra022384.1-P	Field mustard	nucleus	55.06	38.58
AT3G19080.4	Thale cress	nucleus	56.65	38.58
CDX99270	Canola	nucleus	55.06	37.5
Os03t0764450-00	Rice	nucleus	47.78	31.79
GSMUA_Achr7P17340_001	Banana	mitochondrion	12.97	31.54
GSMUA_Achr3P11900_001	Banana	cytosol	36.39	31.51
GSMUA_Achr1P19520_001	Banana	cytosol	36.71	31.44
AT1G49520.1	Thale cress	nucleus	36.71	31.18
GSMUA_Achr10P...	Banana	plastid	12.66	28.37
GSMUA_Achr7P26330_001	Banana	plastid	12.34	27.86
GSMUA_Achr3P30180_001	Banana	plastid	12.03	27.14
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	9.49	23.08
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	10.76	16.75

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.245.10	MapMan:35.2	InterPro:DEK_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G28200_001	EnsemblPlants:GSMUA_Achr4P28200_001	EnsemblPlants:GSMUA_Achr4T28200_001	InterPro:IPR036885	UniProt:M0SST2
PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI0002961B8F	SEG:seg

Description

Putative Upstream activation factor subunit UAF30 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28200_001]

Coordinates

chr4:+:26700481..26707057

Molecular Weight (calculated)

35876.3 Da

IEP (calculated)

5.171

GRAVY (calculated)

-0.852

Length

316 amino acids

Sequence
(BLAST)

001: MVSDAELVGR LREVLRASDL STTTTTSVRR QLEEDFGIDL SDKKAFIRQQ VDLFLSELHD NKDAEEAEEE EEDAAAPAEA VKEEEEEEED HDGEEDDEKT
101: NEGSSKKRKS SKPSKEVKKR GGGFAKLCSL SPLLQDFVGE PELARTEVVK RLWAYIREKN LQDPNNRRKI ICDEKLKPLF NVNVIDMFQM NKALSKHIWP
201: LNSDDGPVTS AKPKQHDKPK KELEGKRQKV GSSGLLAPLP LSDDLVKFFG TGENTLSRSD VVKRMWDYIK GNNLQDPADK RNVICDEKLK ELLKVDSFHG
301: FTVSKLLAPH FIKEKQ

Best Arabidopsis Sequence Match ( AT1G49520.1 )
(BLAST)

001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE

Arabidopsis Description

At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.