Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022384.1-P | Field mustard | nucleus | 98.01 | 98.23 |
| CDX99270 | Canola | nucleus | 95.8 | 93.32 |
| AT3G19080.4 | Thale cress | nucleus | 78.98 | 76.94 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 7.96 | 56.25 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 38.72 | 55.38 |
| KRH76945 | Soybean | nucleus | 40.04 | 53.71 |
| EER93399 | Sorghum | nucleus | 38.05 | 52.76 |
| KRH28515 | Soybean | nucleus | 40.04 | 52.31 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 33.63 | 51.01 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 37.61 | 49.71 |
| TraesCS5D01G411700.1 | Wheat | nucleus | 37.39 | 49.71 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 13.05 | 47.2 |
| PGSC0003DMT400001975 | Potato | nucleus | 30.75 | 46.96 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 37.61 | 46.7 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 28.76 | 45.61 |
| Zm00001d034159_P002 | Maize | cytosol | 26.11 | 45.38 |
| Zm00001d013204_P001 | Maize | nucleus | 34.96 | 41.15 |
| HORVU5Hr1G097590.1 | Barley | nucleus | 30.31 | 38.38 |
| CDY27449 | Canola | nucleus | 25.44 | 35.49 |
| CDX76378 | Canola | cytosol | 25.66 | 34.02 |
| CDX76269 | Canola | cytosol | 6.42 | 32.95 |
| CDX79150 | Canola | nucleus | 25.22 | 32.57 |
| CDX98747 | Canola | nucleus | 25.66 | 31.78 |
| CDX94096 | Canola | nucleus | 25.0 | 30.29 |
| CDY49157 | Canola | mitochondrion | 5.97 | 29.03 |
| CDY12300 | Canola | mitochondrion | 5.97 | 29.03 |
| CDY50950 | Canola | mitochondrion | 7.3 | 28.45 |
| CDY47689 | Canola | mitochondrion | 7.3 | 28.21 |
| Os03t0764450-00 | Rice | nucleus | 28.76 | 27.37 |
| CDY69869 | Canola | plastid | 7.74 | 25.55 |
| CDX75421 | Canola | plastid | 7.74 | 25.36 |
| CDY50651 | Canola | plastid | 8.19 | 25.34 |
| CDY51761 | Canola | mitochondrion | 7.3 | 24.63 |
| CDX72477 | Canola | plastid | 7.3 | 23.74 |
| CDY45303 | Canola | plastid | 7.3 | 23.4 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | GO:A0A078DSL1 | EnsemblPlants:CDX92300 | ProteinID:CDX92300 | ProteinID:CDX92300.1 |
| ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00154024001 |
| InterPro:IPR036885 | PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 | SMART:SM00151 |
| SUPFAM:SSF109715 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI0004EE54BB |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g21070D
Coordinates
chrLK031871:+:1349860..1352623
Molecular Weight (calculated)
51137.1 Da
IEP (calculated)
4.658
GRAVY (calculated)
-0.889
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSESDLVTR LREILSSSDL ETTTPATVRR QLEADFGVEL TEKKAFIRDQ IDAFLESNGG VEENPVSPKA EEDAEEEDDG DEEKEERPVK AKKRGGGGFA
101: KVCQLSPQLE KFIGSSQLAR TEVVKKMWVY IKEKDLQDPK DRRKILCDES LHSLFHVKAI NMFQMNKALA KHIWPLGDGG DGCVTSVKEE EDEGDASGER
201: DEKGEKAEER EEDNEEESEE EVRNLRKRKR KKPAKSEEKP KRKGGGGFAK VCSLSPELQA FTGMTKLART EVVKMLWKYI KENNLQDPKD GRTIICDESL
301: RSLFPLESIN MFQMNKHLSK HIWPLEDNAG ESGGSSSPKN GKLKMETEDG DTESDELNEN DEKPKKEGCG LLAPLPLSDA LIKFLGDGES SFSRADVVKR
401: LWEYIEQNDL QDPSDKKRII CDEKLKELFE VDSFEDISVS KLLTSHYIKI EQ
101: KVCQLSPQLE KFIGSSQLAR TEVVKKMWVY IKEKDLQDPK DRRKILCDES LHSLFHVKAI NMFQMNKALA KHIWPLGDGG DGCVTSVKEE EDEGDASGER
201: DEKGEKAEER EEDNEEESEE EVRNLRKRKR KKPAKSEEKP KRKGGGGFAK VCSLSPELQA FTGMTKLART EVVKMLWKYI KENNLQDPKD GRTIICDESL
301: RSLFPLESIN MFQMNKHLSK HIWPLEDNAG ESGGSSSPKN GKLKMETEDG DTESDELNEN DEKPKKEGCG LLAPLPLSDA LIKFLGDGES SFSRADVVKR
401: LWEYIEQNDL QDPSDKKRII CDEKLKELFE VDSFEDISVS KLLTSHYIKI EQ
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.