Factsheet for Zm00001d034159_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93399	Sorghum	nucleus	81.54	65.03
GSMUA_Achr2P13370_001	Banana	cytosol	14.23	57.81
TraesCS5D01G411700.1	Wheat	nucleus	71.54	54.71
TraesCS5A01G401500.2	Wheat	nucleus	71.92	54.68
TraesCS5B01G406200.2	Wheat	nucleus	71.92	51.37
HORVU5Hr1G097590.1	Barley	nucleus	70.38	51.26
Zm00001d013204_P001	Maize	nucleus	69.62	47.14
GSMUA_Achr4P28200_001	Banana	nucleus	55.77	45.89
VIT_03s0063g01070.t01	Wine grape	nucleus	21.92	45.6
KRH76945	Soybean	nucleus	58.46	45.1
KRH28515	Soybean	nucleus	59.62	44.8
Os03t0764450-00	Rice	nucleus	71.92	39.37
VIT_07s0197g00070.t01	Wine grape	nucleus	44.62	38.93
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	33.08	30.18
PGSC0003DMT400001975	Potato	nucleus	33.85	29.73
Zm00001d035321_P001	Maize	plastid	15.0	27.27
AT3G19080.4	Thale cress	nucleus	47.69	26.72
Bra022384.1-P	Field mustard	nucleus	45.38	26.16
CDX92300	Canola	nucleus	45.38	26.11
Zm00001d015127_P001	Maize	mitochondrion	11.92	26.05
CDX99270	Canola	nucleus	46.15	25.86
Zm00001d013221_P001	Maize	plastid	13.85	24.83
Zm00001d052873_P001	Maize	cytosol	36.54	22.35
Zm00001d053979_P001	Maize	mitochondrion	10.77	20.9
Zm00001d001937_P003	Maize	cytosol	32.69	19.77
Zm00001d026541_P001	Maize	cytosol	29.62	19.64
AT1G49520.1	Thale cress	nucleus	26.54	18.55

Protein Annotations

EnsemblPlants:Zm00001d034159_P002	EnsemblPlants:Zm00001d034159_T002	EnsemblPlantsGene:Zm00001d034159	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF23	PFAM:PF02201	ProteinID:ONM09676.1	ProteinID:ONM09677.1	SEG:seg	SMART:SM00151
SUPFAM:SSF47592	UniParc:UPI0008428510	UniProt:A0A1D6L5U6	MapMan:35.2	:	:

Description

SWIB complex BAF60b domain-containing protein

Coordinates

chr1:+:285318804..285326358

Molecular Weight (calculated)

29306.1 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.624

Length

260 amino acids

Sequence
(BLAST)

001: MQQRWQRWVL GAGDVGMDGG DVPLHRDHVS LHDSHVPGND GKKRGGGFTK LCSLSPALQE FVGASELART EVVKKLWAYI RENNLQDQNN RRKILPDERL
101: KKIFNVNSID MFQMNKALTK HIWPLNSEGP VSPDRSTPKE KPQKRDRSEG KKQKGGSSGA GSGFLVPLQL SDDLVKFIGT GESMLSRSDV VKKMWDYIKG
201: NNLQNYLEFI VIETDPVEIV DPSDRRKIIC DEKLKDLFGV ETFTGFTVSK LLAPHFTKTK

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.