Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P13370_001 | Banana | cytosol | 10.22 | 59.38 |
| AT3G19080.4 | Thale cress | nucleus | 71.24 | 57.11 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 15.59 | 46.4 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 28.76 | 37.54 |
| PGSC0003DMT400001975 | Potato | nucleus | 29.3 | 36.82 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 31.18 | 36.71 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 29.3 | 36.58 |
| EER93399 | Sorghum | nucleus | 31.18 | 35.58 |
| KRH76945 | Soybean | nucleus | 31.99 | 35.31 |
| KRH28515 | Soybean | nucleus | 31.99 | 34.39 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 31.45 | 34.21 |
| TraesCS5D01G411700.1 | Wheat | nucleus | 31.18 | 34.12 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 31.18 | 31.87 |
| AT2G35605.1 | Thale cress | mitochondrion | 9.14 | 31.19 |
| Zm00001d013204_P001 | Maize | nucleus | 30.11 | 29.17 |
| AT3G03590.1 | Thale cress | mitochondrion, plastid | 10.75 | 27.97 |
| AT1G31760.1 | Thale cress | mitochondrion | 8.06 | 26.79 |
| Zm00001d034159_P002 | Maize | cytosol | 18.55 | 26.54 |
| AT2G14880.1 | Thale cress | plastid | 9.95 | 26.24 |
| HORVU5Hr1G097590.1 | Barley | nucleus | 23.39 | 24.37 |
| AT4G34290.1 | Thale cress | plastid | 9.14 | 23.61 |
| AT4G22360.1 | Thale cress | nucleus | 23.66 | 22.86 |
| Os03t0764450-00 | Rice | nucleus | 21.51 | 16.84 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | EntrezGene:841376 | ProteinID:AEE32438.1 | ArrayExpress:AT1G49520 | EnsemblPlantsGene:AT1G49520 |
| RefSeq:AT1G49520 | TAIR:AT1G49520 | RefSeq:AT1G49520-TAIR-G | EnsemblPlants:AT1G49520.1 | TAIR:AT1G49520.1 | EMBL:BT022048 |
| ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR036885 |
| RefSeq:NP_175375.2 | PFAM:PF02201 | PFAM:PF08766 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF23 | UniProt:Q501B9 | SMART:SM00151 | SUPFAM:SSF109715 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf |
| InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI000034F473 | SEG:seg | : | : |
Description
At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
Coordinates
chr1:+:18329659..18332102
Molecular Weight (calculated)
42861.2 Da
IEP (calculated)
4.744
GRAVY (calculated)
-1.059
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.