Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93399 | Sorghum | nucleus | 71.61 | 84.36 |
| Zm00001d034159_P002 | Maize | cytosol | 47.14 | 69.62 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 59.38 | 66.67 |
| TraesCS5D01G411700.1 | Wheat | nucleus | 58.85 | 66.47 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 10.42 | 62.5 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 59.11 | 62.36 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 46.35 | 56.33 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 42.71 | 55.03 |
| KRH76945 | Soybean | nucleus | 45.83 | 52.23 |
| KRH28515 | Soybean | nucleus | 46.61 | 51.73 |
| HORVU5Hr1G097590.1 | Barley | nucleus | 46.88 | 50.42 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 16.15 | 49.6 |
| PGSC0003DMT400001975 | Potato | nucleus | 34.9 | 45.27 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 29.17 | 39.3 |
| Os03t0764450-00 | Rice | nucleus | 46.61 | 37.68 |
| CDX92300 | Canola | nucleus | 41.15 | 34.96 |
| AT3G19080.4 | Thale cress | nucleus | 42.19 | 34.91 |
| Bra022384.1-P | Field mustard | nucleus | 40.36 | 34.37 |
| CDX99270 | Canola | nucleus | 40.36 | 33.41 |
| Zm00001d015127_P001 | Maize | mitochondrion | 9.38 | 30.25 |
| AT1G49520.1 | Thale cress | nucleus | 29.17 | 30.11 |
| Zm00001d035321_P001 | Maize | plastid | 10.94 | 29.37 |
| Zm00001d013221_P001 | Maize | plastid | 10.42 | 27.59 |
| Zm00001d052873_P001 | Maize | cytosol | 26.3 | 23.76 |
| Zm00001d053979_P001 | Maize | mitochondrion | 8.07 | 23.13 |
| Zm00001d001937_P003 | Maize | cytosol | 25.52 | 22.79 |
| Zm00001d026541_P001 | Maize | cytosol | 23.18 | 22.7 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:1.10.245.10 | EntrezGene:100281035 | MapMan:35.2 | UniProt:A0A1D6GGH8 | ProteinID:AQK62656.1 |
| InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR036885 | PFAM:PF02201 |
| PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 | SMART:SM00151 | SUPFAM:SSF109715 | SUPFAM:SSF47592 |
| InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI000843145D | EnsemblPlantsGene:Zm00001d013204 | EnsemblPlants:Zm00001d013204_P001 |
| EnsemblPlants:Zm00001d013204_T001 | SEG:seg | : | : | : | : |
Description
SWIB/MDM2 domain containing protein
Coordinates
chr5:-:6420558..6432756
Molecular Weight (calculated)
43284.9 Da
IEP (calculated)
4.946
GRAVY (calculated)
-0.789
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDLELVER LQEVLRSSDL NTTTTAALRR RLEEDFGADL SHKKAFIREQ VDLFLAEVAA KAEPEEPKEE EELEDAPVPK AEEAEEGEGV EEEGEGEEGG
101: EEEEEEEEEE VDSSSARKKQ RGNDGKKRGG GFTKLCSLSP ALQEFVGASE LARTEVVKKL WAYIRENNLQ DQNNRRKILP DERLKKIFNV NSIDMFQMNK
201: ALTKHIWPLN SEGPVSPDRS TPKEKPQKKD RNEGKKQKGG SSGAGSGLLV PLQLSDDLMK FIGTGESMLS RSDVVKRMWD YIKENNLQVA AAVVCMAWRY
301: LKTSMLGAAA ASSNDDDDLV AAAAAVVIQE LGRKRRWGGS VPGHRTYRRD RLAAHRQLHM DYFVDRPLYN NEMFRRRYIL ESIG
101: EEEEEEEEEE VDSSSARKKQ RGNDGKKRGG GFTKLCSLSP ALQEFVGASE LARTEVVKKL WAYIRENNLQ DQNNRRKILP DERLKKIFNV NSIDMFQMNK
201: ALTKHIWPLN SEGPVSPDRS TPKEKPQKKD RNEGKKQKGG SSGAGSGLLV PLQLSDDLMK FIGTGESMLS RSDVVKRMWD YIKENNLQVA AAVVCMAWRY
301: LKTSMLGAAA ASSNDDDDLV AAAAAVVIQE LGRKRRWGGS VPGHRTYRRD RLAAHRQLHM DYFVDRPLYN NEMFRRRYIL ESIG
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.