Factsheet for AT3G19080.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92300	Canola	nucleus	76.94	78.98
Bra022384.1-P	Field mustard	nucleus	76.29	78.49
CDX99270	Canola	nucleus	77.16	77.16
AT1G49520.1	Thale cress	nucleus	57.11	71.24
GSMUA_Achr2P13370_001	Banana	cytosol	7.97	57.81
GSMUA_Achr4P28200_001	Banana	nucleus	38.58	56.65
EER93399	Sorghum	nucleus	37.72	53.68
KRH76945	Soybean	nucleus	38.79	53.41
KRH28515	Soybean	nucleus	38.58	51.73
VIT_07s0197g00070.t01	Wine grape	nucleus	32.97	51.34
TraesCS5D01G411700.1	Wheat	nucleus	36.64	50.0
TraesCS5A01G401500.2	Wheat	nucleus	36.85	50.0
Zm00001d034159_P002	Maize	cytosol	26.72	47.69
PGSC0003DMT400001975	Potato	nucleus	30.17	47.3
TraesCS5B01G406200.2	Wheat	nucleus	37.07	47.25
VIT_03s0063g01070.t01	Wine grape	nucleus	12.5	46.4
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	28.45	46.32
Zm00001d013204_P001	Maize	nucleus	34.91	42.19
HORVU5Hr1G097590.1	Barley	nucleus	31.03	40.34
AT2G35605.1	Thale cress	mitochondrion	7.76	33.03
AT4G22360.1	Thale cress	nucleus	24.35	29.35
Os03t0764450-00	Rice	nucleus	29.53	28.84
AT1G31760.1	Thale cress	mitochondrion	6.68	27.68
AT3G03590.1	Thale cress	mitochondrion, plastid	8.19	26.57
AT2G14880.1	Thale cress	plastid	7.76	25.53
AT4G34290.1	Thale cress	plastid	7.33	23.61

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	EntrezGene:821442	UniProt:A0A178V7N9	UniProt:A0A1I9LR28	ProteinID:ANM65036.1
ProteinID:ANM65038.1	ArrayExpress:AT3G19080	EnsemblPlantsGene:AT3G19080	RefSeq:AT3G19080	TAIR:AT3G19080	RefSeq:AT3G19080-TAIR-G
EnsemblPlants:AT3G19080.4	Unigene:At.53383	ncoils:Coil	InterPro:DEK_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	RefSeq:NP_001327034.1	RefSeq:NP_001327036.1	ProteinID:OAP01425.1	PFAM:PF02201
PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715	SUPFAM:SSF47592
InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI0007E1D1C1	SEG:seg	:

Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]

Coordinates

chr3:+:6595999..6599089

Molecular Weight (calculated)

52464.5 Da

IEP (calculated)

4.766

GRAVY (calculated)

-0.919

Length

464 amino acids

Sequence
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.