Factsheet for Bra022384.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92300	Canola	nucleus	98.23	98.01
AT3G19080.4	Thale cress	nucleus	78.49	76.29
GSMUA_Achr2P13370_001	Banana	cytosol	7.98	56.25
GSMUA_Achr4P28200_001	Banana	nucleus	38.58	55.06
KRH76945	Soybean	nucleus	40.35	54.01
KRH28515	Soybean	nucleus	40.35	52.6
EER93399	Sorghum	nucleus	37.25	51.53
VIT_07s0197g00070.t01	Wine grape	nucleus	33.48	50.67
TraesCS5A01G401500.2	Wheat	nucleus	37.47	49.42
TraesCS5D01G411700.1	Wheat	nucleus	37.25	49.41
PGSC0003DMT400001975	Potato	nucleus	31.04	47.3
VIT_03s0063g01070.t01	Wine grape	nucleus	13.08	47.2
TraesCS5B01G406200.2	Wheat	nucleus	37.47	46.43
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	28.82	45.61
Zm00001d034159_P002	Maize	cytosol	26.16	45.38
Zm00001d013204_P001	Maize	nucleus	34.37	40.36
HORVU5Hr1G097590.1	Barley	nucleus	30.38	38.38
Bra020851.1-P	Field mustard	nucleus	23.95	33.64
Bra013614.1-P	Field mustard	nucleus	25.06	31.48
Bra019378.1-P	Field mustard	cytosol	25.06	31.04
Bra023201.1-P	Field mustard	mitochondrion	7.54	29.57
Bra033879.1-P	Field mustard	mitochondrion	7.32	28.45
Os03t0764450-00	Rice	nucleus	28.82	27.37
Bra011519.1-P	Field mustard	plastid	7.76	25.36
Bra031985.1-P	Field mustard	mitochondrion	8.43	24.84
Bra034617.1-P	Field mustard	cytosol	4.43	23.81
Bra017644.1-P	Field mustard	plastid	7.1	22.7

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	EnsemblPlantsGene:Bra022384	EnsemblPlants:Bra022384.1	EnsemblPlants:Bra022384.1-P	ncoils:Coil
InterPro:DEK_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	UniProt:M4E0T7
PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI0002547F7A	SEG:seg

Description

AT3G19080 (E=6e-150) | SWIB complex BAF60b domain-containing protein

Coordinates

chrA05:-:18032046..18034415

Molecular Weight (calculated)

50838.8 Da

IEP (calculated)

4.696

GRAVY (calculated)

-0.857

Length

451 amino acids

Sequence
(BLAST)

001: MVSESDLVTR LREILSSSDL ETTTPATVRR QLEADFGVEL TEKKAFIRDQ IDAFLESNGG VGENPVSPKA EEDADEEDDG DEEKEERPVK AKKRGGGGFA
101: KVCQLSPQLE KFIGTSQLAR TEVVKKMWAY IKEKDLQDPK DRRKILCDES LHSLFHVKAI NMFQMNKALA KHIWPLGDGG DGCVTSLKEE DEADASGERD
201: EKGGKAEEME EDNEEESEEE VRNLRKRKRK KPAKSEEKPK RKGGGGFAKV CSLSPELQAF TGMTKLARTE VVKMLWKYIK ENNLQDPKDG RTIICDESLR
301: SLFPLESINM FQMNKHLSKH IWPLEDNAGE SGGSSSPKNG KLKMETEDGD TESDELNEND EKPKKEGCGL LAPLPLSDAL IKFLGDGESS FSRADVVKRL
401: WEYIEQNDLQ DPSDKKRIIC DEKLKELFEV DSFEDISVSK LLTSHYIKIE Q

Best Arabidopsis Sequence Match ( AT3G19080.4 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.