Factsheet for Bra023201.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49157	Canola	mitochondrion	80.87	100.0
CDY12300	Canola	mitochondrion	78.26	96.77
Bra033879.1-P	Field mustard	mitochondrion	86.96	86.21
AT1G31760.1	Thale cress	mitochondrion	70.43	72.32
GSMUA_AchrUn_...	Banana	cytosol	40.0	65.71
Solyc08g005590.2.1	Tomato	nucleus	60.87	57.38
PGSC0003DMT400047544	Potato	plastid	60.0	56.56
KRH76467	Soybean	nucleus	60.0	52.27
GSMUA_Achr7P17340_001	Banana	mitochondrion	58.26	51.54
KRH28989	Soybean	mitochondrion, plastid	59.13	51.52
Os02t0130000-01	Rice	mitochondrion, plastid	56.52	49.62
Zm00001d015127_P001	Maize	mitochondrion	45.22	43.7
TraesCSU01G113700.1	Wheat	plastid	49.57	39.58
TraesCS6B01G116900.1	Wheat	plastid	47.83	38.46
Zm00001d053979_P001	Maize	mitochondrion	44.35	38.06
Bra031985.1-P	Field mustard	mitochondrion	50.43	37.91
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	42.61	37.69
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	47.83	37.67
EES06225	Sorghum	mitochondrion	42.61	37.4
Bra034617.1-P	Field mustard	cytosol	25.22	34.52
Bra011519.1-P	Field mustard	plastid	40.0	33.33
Bra017644.1-P	Field mustard	plastid	40.0	32.62
HORVU6Hr1G015440.1	Barley	plastid	48.7	26.92
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	41.74	23.65
Bra020851.1-P	Field mustard	nucleus	32.17	11.53
Bra013614.1-P	Field mustard	nucleus	30.43	9.75
Bra019378.1-P	Field mustard	cytosol	30.43	9.62
Bra022384.1-P	Field mustard	nucleus	29.57	7.54

Protein Annotations

EnsemblPlants:Bra023201.1	EnsemblPlants:Bra023201.1-P	EnsemblPlantsGene:Bra023201	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI00025423E3	UniProt:M4E350
MapMan:35.2	:	:	:	:	:

Description

AT1G31760 (E=3e-040) | SWIB complex BAF60b domain-containing protein

Coordinates

chrA09:+:20781145..20781731

Molecular Weight (calculated)

12364.1 Da

IEP (calculated)

10.498

GRAVY (calculated)

-0.224

Length

115 amino acids

Sequence
(BLAST)

001: MTGFSRVFGG CRTLMAKATT NAAATGIVAG KEGKGILKTV PVSKTLASFA GESELSRATA VKKVWEHIKG NNLQNPENRK EIICDDKLKT IFEGKDKVGF
101: TEIAKLLSPH FPKSV

Best Arabidopsis Sequence Match ( AT1G31760.1 )
(BLAST)

001: MAGISRVLGG FRTLMSKAAT VEAVTVAGEG KGIFKTRPVS QQLASFAGER ELTRGSALKK VWEYVKLHNL QNPANKKEIH CDDKLKTIFD GKDKVGITEI
101: MKLLSPHFPK SV

Arabidopsis Description

At1g31760 [Source:UniProtKB/TrEMBL;Acc:Q9C504]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.