Factsheet for TraesCS6A01G084700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G113700.1	Wheat	plastid	95.89	97.22
TraesCS6B01G116900.1	Wheat	plastid	94.52	96.5
Os02t0130000-01	Rice	mitochondrion, plastid	54.79	61.07
GSMUA_AchrUn_...	Banana	cytosol	28.77	60.0
Zm00001d015127_P001	Maize	mitochondrion	47.95	58.82
HORVU6Hr1G015440.1	Barley	plastid	82.19	57.69
GSMUA_Achr7P17340_001	Banana	mitochondrion	47.95	53.85
VIT_02s0087g00810.t01	Wine grape	mitochondrion	41.1	52.17
CDY12300	Canola	mitochondrion	32.19	50.54
AT2G35605.1	Thale cress	mitochondrion	37.67	50.46
Zm00001d053979_P001	Maize	mitochondrion	45.89	50.0
CDY51761	Canola	mitochondrion	45.89	50.0
CDY49157	Canola	mitochondrion	31.51	49.46
KRH76467	Soybean	nucleus	44.52	49.24
Bra023201.1-P	Field mustard	mitochondrion	37.67	47.83
KRH28989	Soybean	mitochondrion, plastid	43.15	47.73
VIT_15s0024g00650.t01	Wine grape	mitochondrion	41.78	47.66
CDY50950	Canola	mitochondrion	37.67	47.41
Bra033879.1-P	Field mustard	mitochondrion	37.67	47.41
EES06225	Sorghum	mitochondrion	42.47	47.33
Bra031985.1-P	Field mustard	mitochondrion	49.32	47.06
CDY47689	Canola	mitochondrion	37.67	47.01
CDY50651	Canola	plastid	46.58	46.58
AT1G31760.1	Thale cress	mitochondrion	35.62	46.43
AT3G03590.1	Thale cress	mitochondrion, plastid	45.21	46.15
Solyc08g005590.2.1	Tomato	nucleus	38.36	45.9
Solyc08g075400.2.1	Tomato	plastid	38.36	45.16
PGSC0003DMT400047544	Potato	plastid	37.67	45.08
PGSC0003DMT400004968	Potato	plastid	37.67	44.35
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	34.93	39.23
TraesCS5A01G105100.1	Wheat	plastid	38.36	36.13
TraesCS5A01G398800.1	Wheat	plastid	34.25	35.71
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	35.62	25.62
TraesCS5A01G401500.2	Wheat	nucleus	23.97	10.23
TraesCS7A01G243700.1	Wheat	cytosol	23.29	8.13
TraesCS2A01G488300.1	Wheat	cytosol	21.92	7.71

Protein Annotations

EnsemblPlants:TraesCS6A01G084700.1	EnsemblPlantsGene:TraesCS6A01G084700	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2	:

Description

No Description!

Coordinates

chr6A:+:53116973..53118942

Molecular Weight (calculated)

15374.0 Da

IEP (calculated)

11.113

GRAVY (calculated)

-0.160

Length

146 amino acids

Sequence
(BLAST)

001: MSTAAATVFR GCRALMSPAA AAAAKGGKKT ASAAAAAAAK GGKKPASAAA KPKADKKPVD PNNLRGIMRP VPVSDALRKF GGAAHISRSG VLKIVWDYIK
101: AKDLQNPLNK REIICDEKLK TIFPGRDTVH MMEVTKLLSP HFVKTI

Best Arabidopsis Sequence Match ( AT2G35605.1 )
(BLAST)

001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.