Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053979_P001 | Maize | mitochondrion | 78.15 | 69.4 |
| EES06225 | Sorghum | mitochondrion | 75.63 | 68.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.61 | 57.14 |
| Os02t0130000-01 | Rice | mitochondrion, plastid | 58.82 | 53.44 |
| VIT_02s0087g00810.t01 | Wine grape | mitochondrion | 47.06 | 48.7 |
| AT1G31760.1 | Thale cress | mitochondrion | 45.38 | 48.21 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 58.82 | 47.95 |
| TraesCSU01G113700.1 | Wheat | plastid | 57.98 | 47.92 |
| CDY12300 | Canola | mitochondrion | 36.97 | 47.31 |
| GSMUA_Achr7P17340_001 | Banana | mitochondrion | 51.26 | 46.92 |
| CDY49157 | Canola | mitochondrion | 36.13 | 46.24 |
| TraesCS6B01G116900.1 | Wheat | plastid | 55.46 | 46.15 |
| Bra023201.1-P | Field mustard | mitochondrion | 43.7 | 45.22 |
| AT2G35605.1 | Thale cress | mitochondrion | 41.18 | 44.95 |
| CDY47689 | Canola | mitochondrion | 43.7 | 44.44 |
| PGSC0003DMT400047544 | Potato | plastid | 45.38 | 44.26 |
| VIT_15s0024g00650.t01 | Wine grape | mitochondrion | 47.06 | 43.75 |
| Solyc08g005590.2.1 | Tomato | nucleus | 44.54 | 43.44 |
| Bra033879.1-P | Field mustard | mitochondrion | 42.02 | 43.1 |
| CDY50950 | Canola | mitochondrion | 42.02 | 43.1 |
| Solyc08g075400.2.1 | Tomato | plastid | 42.86 | 41.13 |
| KRH76467 | Soybean | nucleus | 45.38 | 40.91 |
| PGSC0003DMT400004968 | Potato | plastid | 42.02 | 40.32 |
| AT3G03590.1 | Thale cress | mitochondrion, plastid | 47.9 | 39.86 |
| CDY51761 | Canola | mitochondrion | 44.54 | 39.55 |
| GSMUA_Achr4P05700_001 | Banana | cytosol, mitochondrion | 42.86 | 39.23 |
| KRH28989 | Soybean | mitochondrion, plastid | 42.86 | 38.64 |
| Zm00001d035321_P001 | Maize | plastid | 46.22 | 38.46 |
| Bra031985.1-P | Field mustard | mitochondrion | 47.06 | 36.6 |
| CDY50651 | Canola | plastid | 44.54 | 36.3 |
| Zm00001d013221_P001 | Maize | plastid | 37.82 | 31.03 |
| HORVU6Hr1G015440.1 | Barley | plastid | 53.78 | 30.77 |
| GSMUA_Achr4P12450_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 41.18 | 24.14 |
| Zm00001d034159_P002 | Maize | cytosol | 26.05 | 11.92 |
| Zm00001d013204_P001 | Maize | nucleus | 30.25 | 9.38 |
| Zm00001d052873_P001 | Maize | cytosol | 26.89 | 7.53 |
| Zm00001d001937_P003 | Maize | cytosol | 22.69 | 6.28 |
| Zm00001d026541_P001 | Maize | cytosol | 20.17 | 6.12 |
Protein Annotations
| Gene3D:1.10.245.10 | EntrezGene:100283921 | MapMan:35.2 | ProteinID:AQK68129.1 | UniProt:B6SIC9 | EMBL:BT062888 |
| EMBL:EU952494 | EMBL:EU966414 | EMBL:EU973890 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | EMBL:KJ727477 | PFAM:PF02201 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF8 | SMART:SM00151 |
| SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | SignalP:SignalP-noTM | UniParc:UPI000182B923 |
| EnsemblPlantsGene:Zm00001d015127 | EnsemblPlants:Zm00001d015127_P001 | EnsemblPlants:Zm00001d015127_T001 | SEG:seg | : | : |
Description
SWIB/MDM2 domain superfamily protein
Coordinates
chr5:-:76604702..76607297
Molecular Weight (calculated)
12541.4 Da
IEP (calculated)
11.521
GRAVY (calculated)
-0.067
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MARVFRGSLL LMSPAAAAAA AAAAGAKKAA STKPRAPAGI TKPMPVSEAF RRFAGGAREV ARSEAIKLVW THIKAHGLQN PSNKTEINCD ATLKSLFGGR
101: DKIGMMEVSK LLSPHFLKN
101: DKIGMMEVSK LLSPHFLKN
001: MSSVAAMVFR GARSLLAPAS RATSSLVSAG STKKPAAKPK AKAKPKPKAK SDSPAKKTPR STGIFKVTPV SPVLAQFLGT GETSRTDAIK GIWTYIKSHD
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA
Arabidopsis Description
At3g03590 [Source:UniProtKB/TrEMBL;Acc:Q9SS61]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.