Factsheet for GSMUA_Achr7P17340_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	40.77	75.71
CDY49157	Canola	mitochondrion	44.62	62.37
CDY12300	Canola	mitochondrion	44.62	62.37
VIT_02s0087g00810.t01	Wine grape	mitochondrion	52.31	59.13
Bra023201.1-P	Field mustard	mitochondrion	51.54	58.26
Solyc08g005590.2.1	Tomato	nucleus	53.85	57.38
AT2G35605.1	Thale cress	mitochondrion	47.69	56.88
CDY47689	Canola	mitochondrion	50.77	56.41
VIT_15s0024g00650.t01	Wine grape	mitochondrion	55.38	56.25
Bra033879.1-P	Field mustard	mitochondrion	50.0	56.03
CDY50950	Canola	mitochondrion	50.0	56.03
PGSC0003DMT400047544	Potato	plastid	52.31	55.74
Os02t0130000-01	Rice	mitochondrion, plastid	53.85	53.44
KRH76467	Soybean	nucleus	53.85	53.03
AT1G31760.1	Thale cress	mitochondrion	45.38	52.68
PGSC0003DMT400004968	Potato	plastid	50.0	52.42
Solyc08g075400.2.1	Tomato	plastid	50.0	52.42
KRH28989	Soybean	mitochondrion, plastid	52.31	51.52
Zm00001d015127_P001	Maize	mitochondrion	46.92	51.26
TraesCSU01G113700.1	Wheat	plastid	53.85	48.61
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	53.85	47.95
TraesCS6B01G116900.1	Wheat	plastid	52.31	47.55
EES06225	Sorghum	mitochondrion	47.69	47.33
Zm00001d053979_P001	Maize	mitochondrion	48.46	47.01
CDY51761	Canola	mitochondrion	48.46	47.01
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	46.92	46.92
AT3G03590.1	Thale cress	mitochondrion, plastid	50.77	46.15
CDY50651	Canola	plastid	49.23	43.84
Bra031985.1-P	Field mustard	mitochondrion	51.54	43.79
GSMUA_Achr10P...	Banana	plastid	46.15	42.55
GSMUA_Achr3P30180_001	Banana	plastid	39.23	36.43
GSMUA_Achr7P26330_001	Banana	plastid	38.46	35.71
HORVU6Hr1G015440.1	Barley	plastid	52.31	32.69
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	47.69	30.54
GSMUA_Achr2P13370_001	Banana	cytosol	12.31	25.0
GSMUA_Achr4P28200_001	Banana	nucleus	31.54	12.97
GSMUA_Achr3P11900_001	Banana	cytosol	29.23	10.41
GSMUA_Achr1P19520_001	Banana	cytosol	28.46	10.03

Protein Annotations

EnsemblPlants:GSMUA_Achr7P17340_001	EnsemblPlants:GSMUA_Achr7T17340_001	EnsemblPlantsGene:GSMUA_Achr7G17340_001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI00029481F3
UniProt:M0TIC1	MapMan:35.2	:	:	:	:

Description

SWIB/MDM2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G17340_001]

Coordinates

chr7:+:19456514..19458778

Molecular Weight (calculated)

13924.2 Da

IEP (calculated)

10.907

GRAVY (calculated)

-0.096

Length

130 amino acids

Sequence
(BLAST)

001: MTRVFGGCRT LAAAAARAAV AARAGTKASA AAPAVISSPS STAAKPKHSG ILKPIPVSLA MRKFLGVPEI SRSQAVKKIW EYIKGHQLQN PANKKEICCD
101: EKLKTLFEDR DKVGMLEIAK LISPHFLKSK

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.