Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- plastid 2
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_03s0063g01070.t01 | Wine grape | nucleus | 50.0 | 25.6 |
GSMUA_AchrUn_... | Banana | cytosol | 18.75 | 17.14 |
GSMUA_Achr7P26330_001 | Banana | plastid | 37.5 | 17.14 |
GSMUA_Achr3P30180_001 | Banana | plastid | 37.5 | 17.14 |
GSMUA_Achr10P... | Banana | plastid | 32.81 | 14.89 |
GSMUA_Achr4P28200_001 | Banana | nucleus | 71.88 | 14.56 |
Zm00001d034159_P002 | Maize | cytosol | 57.81 | 14.23 |
VIT_07s0197g00070.t01 | Wine grape | nucleus | 64.06 | 13.76 |
KRH76945 | Soybean | nucleus | 67.19 | 12.76 |
KRH28515 | Soybean | nucleus | 67.19 | 12.43 |
GSMUA_Achr7P17340_001 | Banana | mitochondrion | 25.0 | 12.31 |
EER93399 | Sorghum | nucleus | 62.5 | 12.27 |
GSMUA_Achr4P05700_001 | Banana | cytosol, mitochondrion | 23.44 | 11.54 |
TraesCS5D01G411700.1 | Wheat | nucleus | 59.38 | 11.18 |
TraesCS5A01G401500.2 | Wheat | nucleus | 59.38 | 11.11 |
Solyc01g108290.2.1 | Tomato | nucleus | 56.25 | 10.81 |
TraesCS5B01G406200.2 | Wheat | nucleus | 59.38 | 10.44 |
Zm00001d013204_P001 | Maize | nucleus | 62.5 | 10.42 |
PGSC0003DMT400066349 | Potato | cytosol | 54.69 | 10.42 |
AT1G49520.1 | Thale cress | nucleus | 59.38 | 10.22 |
HORVU5Hr1G097590.1 | Barley | nucleus | 54.69 | 9.8 |
GSMUA_Achr4P12450_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 29.69 | 9.36 |
Os03t0764450-00 | Rice | nucleus | 59.38 | 8.0 |
Bra022384.1-P | Field mustard | nucleus | 56.25 | 7.98 |
AT3G19080.4 | Thale cress | nucleus | 57.81 | 7.97 |
CDX92300 | Canola | nucleus | 56.25 | 7.96 |
CDX99270 | Canola | nucleus | 56.25 | 7.76 |
GSMUA_Achr1P19520_001 | Banana | cytosol | 39.06 | 6.78 |
GSMUA_Achr3P11900_001 | Banana | cytosol | 37.5 | 6.58 |
Protein Annotations
EnsemblPlants:GSMUA_Achr2P13370_001 | EnsemblPlants:GSMUA_Achr2T13370_001 | EnsemblPlantsGene:GSMUA_Achr2G13370_001 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 |
PFAM:PF02201 | SUPFAM:SSF47592 | UniParc:UPI000296E587 | UniProt:M0S7M8 | MapMan:35.2 | : |
Description
upstream activation factor subunit spp27, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G13370_001]
Coordinates
chr2:+:15536132..15536693
Molecular Weight (calculated)
7347.0 Da
IEP (calculated)
8.918
GRAVY (calculated)
-0.239
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MSFCVIDVRS NKLSDEVRKR GGGFTKLCSL SPLLQDFVGK SELARTEVVK WLWPYICEKK LQDP
001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
Arabidopsis Description
At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.