Factsheet for GSMUA_Achr4P12450_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	22.17	64.29
PGSC0003DMT400047544	Potato	plastid	29.56	49.18
Solyc08g005590.2.1	Tomato	nucleus	29.56	49.18
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	30.54	47.69
GSMUA_Achr7P17340_001	Banana	mitochondrion	30.54	47.69
VIT_15s0024g00650.t01	Wine grape	mitochondrion	30.05	47.66
CDY49157	Canola	mitochondrion	20.2	44.09
CDY12300	Canola	mitochondrion	20.2	44.09
AT2G35605.1	Thale cress	mitochondrion	23.65	44.04
AT1G31760.1	Thale cress	mitochondrion	24.14	43.75
Solyc08g075400.2.1	Tomato	plastid	26.6	43.55
PGSC0003DMT400004968	Potato	plastid	26.6	43.55
VIT_02s0087g00810.t01	Wine grape	mitochondrion	24.14	42.61
Bra023201.1-P	Field mustard	mitochondrion	23.65	41.74
Os02t0130000-01	Rice	mitochondrion, plastid	26.6	41.22
Zm00001d015127_P001	Maize	mitochondrion	24.14	41.18
Zm00001d053979_P001	Maize	mitochondrion	26.6	40.3
Bra033879.1-P	Field mustard	mitochondrion	22.66	39.66
CDY50950	Canola	mitochondrion	22.66	39.66
CDY47689	Canola	mitochondrion	22.66	39.32
AT3G03590.1	Thale cress	mitochondrion, plastid	27.59	39.16
GSMUA_Achr7P26330_001	Banana	plastid	26.6	38.57
EES06225	Sorghum	mitochondrion	24.63	38.17
GSMUA_Achr10P...	Banana	plastid	26.11	37.59
GSMUA_Achr3P30180_001	Banana	plastid	25.62	37.14
KRH28989	Soybean	mitochondrion, plastid	24.14	37.12
TraesCS6B01G116900.1	Wheat	plastid	26.11	37.06
TraesCSU01G113700.1	Wheat	plastid	26.11	36.81
KRH76467	Soybean	nucleus	23.65	36.36
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	25.62	35.62
Bra031985.1-P	Field mustard	mitochondrion	25.12	33.33
CDY50651	Canola	plastid	23.65	32.88
CDY51761	Canola	mitochondrion	21.67	32.84
GSMUA_Achr2P13370_001	Banana	cytosol	9.36	29.69
HORVU6Hr1G015440.1	Barley	plastid	24.63	24.04
GSMUA_Achr4P28200_001	Banana	nucleus	16.75	10.76
GSMUA_Achr1P19520_001	Banana	cytosol	15.76	8.67
GSMUA_Achr3P11900_001	Banana	cytosol	15.27	8.49

Protein Annotations

EnsemblPlants:GSMUA_Achr4P12450_001	EnsemblPlants:GSMUA_Achr4T12450_001	EnsemblPlantsGene:GSMUA_Achr4G12450_001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	TMHMM:TMhelix
UniParc:UPI0002963EFA	UniProt:M0SNB0	MapMan:35.2	:	:	:

Description

Putative SWIB/MDM2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G12450_001]

Coordinates

chr4:-:9222072..9224496

Molecular Weight (calculated)

23140.6 Da

IEP (calculated)

10.959

GRAVY (calculated)

-0.241

Length

203 amino acids

Sequence
(BLAST)

001: MNVKYYLCIF CSILISGLLI ASIADVFEFK NYRRLYSRST VVAYVRKRNE RRSLRELSRG GVRQRLAIRM HGRNQNPQFC PILRIDSKVR VGDMSRVFGG
101: CRVLMVAAKA EAASPAAEKM QSGFLKPHPI SPAMQKFVGA SEISRNVAIK KIWEHIKLNQ LQDTATKSEI HCDDKLKSIF DGRDKVRMLE ISGLIASHFP
201: KRK

Best Arabidopsis Sequence Match ( AT2G35605.1 )
(BLAST)

001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.