Factsheet for Solyc08g075400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004968	Potato	plastid	95.97	95.97
Solyc08g005590.2.1	Tomato	nucleus	67.74	68.85
GSMUA_AchrUn_...	Banana	cytosol	36.29	64.29
VIT_02s0087g00810.t01	Wine grape	mitochondrion	54.03	58.26
VIT_15s0024g00650.t01	Wine grape	mitochondrion	56.45	54.69
Os02t0130000-01	Rice	mitochondrion, plastid	53.23	50.38
GSMUA_Achr7P17340_001	Banana	mitochondrion	52.42	50.0
CDY51761	Canola	mitochondrion	50.0	46.27
Zm00001d015127_P001	Maize	mitochondrion	41.13	42.86
AT3G03590.1	Thale cress	mitochondrion, plastid	48.39	41.96
Bra031985.1-P	Field mustard	mitochondrion	51.61	41.83
CDY50651	Canola	plastid	49.19	41.78
Zm00001d053979_P001	Maize	mitochondrion	42.74	39.55
TraesCSU01G113700.1	Wheat	plastid	45.16	38.89
TraesCS6B01G116900.1	Wheat	plastid	44.35	38.46
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	40.32	38.46
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	45.16	38.36
EES06225	Sorghum	mitochondrion	40.32	38.17
Solyc01g107330.2.1	Tomato	plastid	41.94	35.62
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	43.55	26.6
HORVU6Hr1G015440.1	Barley	plastid	43.55	25.96
Solyc01g108290.2.1	Tomato	nucleus	28.23	10.51
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	22.58	9.82
Solyc11g012290.1.1	Tomato	cytosol	26.61	9.19

Protein Annotations

EnsemblPlants:Solyc08g075400.2.1	EnsemblPlantsGene:Solyc08g075400.2	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000276B6E2	UniProt:K4CMQ7
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:59542842..59545429

Molecular Weight (calculated)

13428.2 Da

IEP (calculated)

10.743

GRAVY (calculated)

-0.353

Length

124 amino acids

Sequence
(BLAST)

001: MASSTRIFGN CCRALMAAAK TSAATETTAA ATATVTKARG RPTGILKPQP VSTALGSFLG TKESSRADAV KKVWEYIKTQ NLQNPTNKRE IHCDDKLKTI
101: FDGKDKVGFL EIARLLSQHF RKAA

Best Arabidopsis Sequence Match ( AT2G35605.1 )
(BLAST)

001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.