Factsheet for Bra031985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51761	Canola	mitochondrion	81.05	92.54
CDY50651	Canola	plastid	86.93	91.1
AT3G03590.1	Thale cress	mitochondrion, plastid	73.86	79.02
GSMUA_AchrUn_...	Banana	cytosol	24.84	54.29
VIT_15s0024g00650.t01	Wine grape	mitochondrion	44.44	53.12
PGSC0003DMT400004968	Potato	plastid	42.48	52.42
Solyc08g075400.2.1	Tomato	plastid	41.83	51.61
GSMUA_Achr7P17340_001	Banana	mitochondrion	43.79	51.54
VIT_02s0087g00810.t01	Wine grape	mitochondrion	38.56	51.3
Bra023201.1-P	Field mustard	mitochondrion	37.91	50.43
TraesCS6B01G116900.1	Wheat	plastid	46.41	49.65
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	47.06	49.32
Os02t0130000-01	Rice	mitochondrion, plastid	41.83	48.85
TraesCSU01G113700.1	Wheat	plastid	45.75	48.61
Bra033879.1-P	Field mustard	mitochondrion	35.95	47.41
Zm00001d015127_P001	Maize	mitochondrion	36.6	47.06
Zm00001d053979_P001	Maize	mitochondrion	39.22	44.78
EES06225	Sorghum	mitochondrion	36.6	42.75
Bra034617.1-P	Field mustard	cytosol	22.88	41.67
Bra011519.1-P	Field mustard	plastid	33.33	36.96
Bra017644.1-P	Field mustard	plastid	33.33	36.17
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	30.72	36.15
HORVU6Hr1G015440.1	Barley	plastid	42.48	31.25
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	33.33	25.12
Bra020851.1-P	Field mustard	nucleus	25.49	12.15
Bra013614.1-P	Field mustard	nucleus	25.49	10.86
Bra019378.1-P	Field mustard	cytosol	23.53	9.89
Bra022384.1-P	Field mustard	nucleus	24.84	8.43

Protein Annotations

EnsemblPlants:Bra031985.1	EnsemblPlants:Bra031985.1-P	EnsemblPlantsGene:Bra031985	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000254633D
UniProt:M4ET55	MapMan:35.2	:	:	:	:

Description

AT3G03590 (E=2e-037) | SWIB complex BAF60b domain-containing protein

Coordinates

chrA02:-:26800910..26801837

Molecular Weight (calculated)

16410.8 Da

IEP (calculated)

10.967

GRAVY (calculated)

-0.346

Length

153 amino acids

Sequence
(BLAST)

001: MSSVAARVFF RGCRSLLAPA SRAAATSSVV SSSRSVSTVA AGGTKKSAAK PKAKPKPKSK PDSLTKKTPR TTGIFKATPV SPALAHFLGT GETTRTDAVK
101: EVWTYVKSHD LQNPADKREI FCDEKLKQIF EGKDKVGFLE VTKLLSTHFV KTA

Best Arabidopsis Sequence Match ( AT3G03590.1 )
(BLAST)

001: MSSVAAMVFR GARSLLAPAS RATSSLVSAG STKKPAAKPK AKAKPKPKAK SDSPAKKTPR STGIFKVTPV SPVLAQFLGT GETSRTDAIK GIWTYIKSHD
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA

Arabidopsis Description

At3g03590 [Source:UniProtKB/TrEMBL;Acc:Q9SS61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.