Factsheet for Bra017644.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45303	Canola	plastid	98.58	98.58
CDX72477	Canola	plastid	95.04	96.4
Bra011519.1-P	Field mustard	plastid	85.11	86.96
AT4G34290.1	Thale cress	plastid	81.56	79.86
AT2G14880.1	Thale cress	plastid	73.76	73.76
VIT_03s0091g00430.t01	Wine grape	plastid	63.83	62.07
PGSC0003DMT400025339	Potato	plastid	59.57	61.31
Solyc01g107330.2.1	Tomato	plastid	63.12	60.96
PGSC0003DMT400066526	Potato	plastid	61.7	60.0
PGSC0003DMT400059663	Potato	plastid	58.16	59.42
GSMUA_Achr10P...	Banana	plastid	53.19	53.19
KRH77941	Soybean	nucleus	49.65	50.36
Bra034617.1-P	Field mustard	cytosol	29.79	50.0
GSMUA_Achr3P30180_001	Banana	plastid	48.94	49.29
GSMUA_Achr7P26330_001	Banana	plastid	48.94	49.29
KRH27569	Soybean	nucleus	49.65	47.3
HORVU5Hr1G028290.1	Barley	plastid	43.97	40.52
TraesCS5B01G108300.1	Wheat	plastid	43.97	40.52
TraesCS5D01G115900.1	Wheat	plastid	43.97	40.52
Bra023201.1-P	Field mustard	mitochondrion	32.62	40.0
Zm00001d035321_P001	Maize	plastid	40.43	39.86
TraesCS5A01G105100.1	Wheat	plastid	43.26	39.35
Bra033879.1-P	Field mustard	mitochondrion	31.91	38.79
EES17082	Sorghum	plastid	39.72	38.1
Bra031985.1-P	Field mustard	mitochondrion	36.17	33.33
Os12t0507500-00	Rice	plastid	29.79	23.33
Bra020851.1-P	Field mustard	nucleus	31.91	14.02
Bra013614.1-P	Field mustard	nucleus	34.04	13.37
Bra019378.1-P	Field mustard	cytosol	31.91	12.36
Bra022384.1-P	Field mustard	nucleus	22.7	7.1

Protein Annotations

EnsemblPlants:Bra017644.1	EnsemblPlants:Bra017644.1-P	EnsemblPlantsGene:Bra017644	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0002541202
UniProt:M4DMB2	MapMan:35.2	:	:	:	:

Description

AT4G34290 (E=2e-044) | SWIB complex BAF60b domain-containing protein

Coordinates

chrA03:+:29503887..29504846

Molecular Weight (calculated)

15690.1 Da

IEP (calculated)

10.864

GRAVY (calculated)

-0.299

Length

141 amino acids

Sequence
(BLAST)

001: MALSSATFST FLRVDTAPFR STPSLSSLRI SSHPANLRMV RAVTSATAAS SEPSSTTKTR EPRGIMKPRP VTPEMQDVVG ESVIPRTQAL KRIWAYIKEH
101: DLQDPQNKKV IICNEKLKKI FDGKDRVGFL EIAKLIGPHF L

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.