Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G108300.1 | Wheat | plastid | 98.06 | 99.35 |
| HORVU5Hr1G028290.1 | Barley | plastid | 98.06 | 99.35 |
| TraesCS5D01G115900.1 | Wheat | plastid | 97.42 | 98.69 |
| Zm00001d035321_P001 | Maize | plastid | 70.97 | 76.92 |
| EES17082 | Sorghum | plastid | 72.26 | 76.19 |
| CDX76269 | Canola | cytosol | 32.26 | 56.82 |
| Os12t0507500-00 | Rice | plastid | 61.94 | 53.33 |
| VIT_03s0091g00430.t01 | Wine grape | plastid | 48.39 | 51.72 |
| GSMUA_Achr10P... | Banana | plastid | 46.45 | 51.06 |
| TraesCS5A01G398800.1 | Wheat | plastid | 45.81 | 50.71 |
| PGSC0003DMT400066526 | Potato | plastid | 47.1 | 50.34 |
| Solyc01g107330.2.1 | Tomato | plastid | 46.45 | 49.32 |
| PGSC0003DMT400025339 | Potato | plastid | 43.23 | 48.91 |
| PGSC0003DMT400059663 | Potato | plastid | 42.58 | 47.83 |
| CDX75421 | Canola | plastid | 40.65 | 45.65 |
| Bra011519.1-P | Field mustard | plastid | 40.65 | 45.65 |
| CDX72477 | Canola | plastid | 40.65 | 45.32 |
| CDY69869 | Canola | plastid | 40.0 | 45.26 |
| AT2G14880.1 | Thale cress | plastid | 40.65 | 44.68 |
| AT4G34290.1 | Thale cress | plastid | 41.29 | 44.44 |
| CDY45303 | Canola | plastid | 40.0 | 43.97 |
| Bra017644.1-P | Field mustard | plastid | 39.35 | 43.26 |
| Bra034617.1-P | Field mustard | cytosol | 21.94 | 40.48 |
| KRH77941 | Soybean | nucleus | 35.48 | 39.57 |
| KRH27569 | Soybean | nucleus | 37.42 | 39.19 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 36.13 | 38.36 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 27.1 | 12.28 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 27.1 | 10.12 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 22.58 | 8.37 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G105100.1 | EnsemblPlantsGene:TraesCS5A01G105100 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF21 |
| PFAM:PF02201 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5A:-:169308220..169311251
Molecular Weight (calculated)
16479.3 Da
IEP (calculated)
10.939
GRAVY (calculated)
-0.141
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATAIRSGE LLAFPAALRR GPPVASASVV AFRLRAPVAG RVAVRVVAAA AEGAGAEAEA EAEGKPKPKK KRAASGIMKP KPISPELREF VGGAAELPRT
101: EALKIIWAHI KGNNLQDPEN KKIIVCDEKL KKIFGGRERV GFLEISGLLN PHFQK
101: EALKIIWAHI KGNNLQDPEN KKIIVCDEKL KKIFGGRERV GFLEISGLLN PHFQK
001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
Arabidopsis Description
SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.