Factsheet for TraesCS2A01G488300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G488600.1	Wheat	cytosol	96.14	95.91
TraesCS2B01G515900.1	Wheat	plastid	81.45	95.21
HORVU2Hr1G109030.1	Barley	cytosol	92.53	93.66
Os04t0665500-01	Rice	cytosol	69.4	74.42
KXG27277	Sorghum	cytosol	70.6	74.18
Zm00001d026541_P001	Maize	cytosol	66.75	70.66
Zm00001d001937_P003	Maize	cytosol	71.57	69.07
GSMUA_Achr1P19520_001	Banana	cytosol	47.47	53.39
GSMUA_Achr3P11900_001	Banana	cytosol	45.54	51.78
VIT_00s0187g00240.t01	Wine grape	nucleus	40.48	48.84
VIT_00s0187g00190.t01	Wine grape	cytosol	40.24	48.13
VIT_19s0090g01460.t01	Wine grape	cytosol	37.59	47.13
KRH51159	Soybean	cytosol	37.11	46.39
CDY27449	Canola	nucleus	36.14	46.3
KRH01994	Soybean	cytosol	36.39	45.9
KRH46275	Soybean	cytosol	35.18	44.24
CDX76378	Canola	cytosol	35.66	43.4
CDX98747	Canola	nucleus	37.83	43.01
Bra020851.1-P	Field mustard	nucleus	33.25	42.99
Bra019378.1-P	Field mustard	cytosol	37.35	42.58
Solyc11g012290.1.1	Tomato	cytosol	36.63	42.34
PGSC0003DMT400034549	Potato	cytosol	36.87	42.15
CDX79150	Canola	nucleus	35.42	42.0
Bra013614.1-P	Field mustard	nucleus	35.66	41.23
CDX94096	Canola	nucleus	36.87	41.02
TraesCS7A01G243700.1	Wheat	cytosol	40.96	40.67
AT4G22360.1	Thale cress	nucleus	37.11	40.0
TraesCS5A01G401500.2	Wheat	nucleus	25.54	30.99
TraesCS5A01G105100.1	Wheat	plastid	10.12	27.1
TraesCS5A01G398800.1	Wheat	plastid	8.92	26.43
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	7.71	21.92

Protein Annotations

EnsemblPlants:TraesCS2A01G488300.1	EnsemblPlantsGene:TraesCS2A01G488300	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF19
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2	:

Description

No Description!

Coordinates

chr2A:-:722735961..722739063

Molecular Weight (calculated)

44122.8 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.288

Length

415 amino acids

Sequence
(BLAST)

001: MVSDQDIAAC VESLLRGALE AGGGGAGEAA SLAAVLQQAQ ARLGVDLSHK APYIRDQMDL FFGPRLQPPP PPPPKAQNQN QNPPPLPASA PAPAPAPAMT
101: QAPPQPQLLP LEVQQQQQML QMQQQQQQQF AAIQPQFIFQ TMPQLPPVVS GGGAAAVSAP PPAVPAMAFY PPPPLAFRYT NALGGVATGG TVSFQQPAPG
201: AGAITSPTAA PQAVGDNKES ASKRKRGGPG GLNKVCAISP ELQTVVGETA MSRTQIVKQL WAYIRQNNLQ DPDDKRKIIC NDELRIVFGT DSTDMFKMNK
301: LLAKHITPLD PKDQPSEAKK IKAATPAPQQ MPTINQNQPY VVVSDALAKF LGVEGTVPHD DALKYLWDYI KANQLEDPAS ASILCDSSLQ ELFGCESIPA
401: SGLSDLLAHH FIQRT

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.