Factsheet for HORVU2Hr1G109030.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G515900.1	Wheat	plastid	82.93	95.77
TraesCS2A01G488300.1	Wheat	cytosol	93.66	92.53
TraesCS2D01G488600.1	Wheat	cytosol	93.66	92.31
Os04t0665500-01	Rice	cytosol	70.0	74.16
KXG27277	Sorghum	cytosol	69.51	72.15
Zm00001d026541_P001	Maize	cytosol	65.61	68.62
Zm00001d001937_P003	Maize	cytosol	70.24	66.98
GSMUA_Achr1P19520_001	Banana	cytosol	47.56	52.85
GSMUA_Achr3P11900_001	Banana	cytosol	45.85	51.51
VIT_00s0187g00240.t01	Wine grape	nucleus	40.73	48.55
VIT_00s0187g00190.t01	Wine grape	cytosol	40.49	47.84
VIT_19s0090g01460.t01	Wine grape	cytosol	37.56	46.53
KRH51159	Soybean	cytosol	37.32	46.08
CDY27449	Canola	nucleus	36.1	45.68
KRH01994	Soybean	cytosol	36.59	45.59
KRH46275	Soybean	cytosol	36.1	44.85
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	35.61	43.32
CDX76378	Canola	cytosol	35.61	42.82
Bra020851.1-P	Field mustard	nucleus	33.41	42.68
CDX98747	Canola	nucleus	37.8	42.47
Solyc11g012290.1.1	Tomato	cytosol	37.07	42.34
PGSC0003DMT400034549	Potato	cytosol	37.32	42.15
Bra019378.1-P	Field mustard	cytosol	37.32	42.03
CDX79150	Canola	nucleus	35.37	41.43
Bra013614.1-P	Field mustard	nucleus	35.61	40.67
CDX94096	Canola	nucleus	36.83	40.48
AT4G22360.1	Thale cress	nucleus	37.32	39.74
HORVU5Hr1G028290.1	Barley	plastid	10.24	27.45
HORVU5Hr1G097590.1	Barley	nucleus	22.68	26.05
HORVU6Hr1G015440.1	Barley	plastid	7.8	15.38

Protein Annotations

EnsemblPlants:HORVU2Hr1G109030.1	EnsemblPlantsGene:HORVU2Hr1G109030	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DEK_C	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF19	PFAM:PF02201	PFAM:PF08766	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI000B462A4F	UniProt:A0A287JDV7	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:715705542..715709481

Molecular Weight (calculated)

43678.3 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.283

Length

410 amino acids

Sequence
(BLAST)

001: MVSDQEIAGC VEALLRGSLE AGGAGEATTL AAVLQRAQAQ LGVDLSHKAP YIRDQMDLFF GPRLQPPPPP PPKSQAQNPP PLPASAPAPA PAMTQAMPQQ
101: LPLEVQQQQQ MLQMQQQQQQ FAAIQPQFIF QTMPQLPPVV SGGGAATNNA AAVSAPPAVP AMAFYPPPPL AFRYTNALGG VATGGTLSFQ QPAPGVGAIT
201: SPTAAPQAAG DNKESASKRK RGGPGGLNKV CAISPELQTV VGETAMSRTQ IVKQLWAYIR QNNLQDPDDK RKIICNDELR IVFGTDSTDM FKMNKLLAKH
301: ITPLDPKDKP SEAKKIKAAN AAPQQMPTTN QNQPYVVVSD ALAKFLGVEG TVAHDDALKY LWDYIKANQL EDPASASILC DSSLQELFGC ESIPTSGLSD
401: LLAHHFIQRT

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.