CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51159	Soybean	cytosol	94.22	93.37
VIT_00s0187g00240.t01	Wine grape	nucleus	70.52	67.44
VIT_00s0187g00190.t01	Wine grape	cytosol	70.52	66.86
CDY27449	Canola	nucleus	58.66	59.57
CDX76378	Canola	cytosol	61.7	59.53
Bra020851.1-P	Field mustard	nucleus	55.62	57.01
KRH46275	Soybean	cytosol	56.84	56.67
Bra019378.1-P	Field mustard	cytosol	62.31	56.32
CDX79150	Canola	nucleus	59.88	56.29
CDX98747	Canola	nucleus	62.31	56.16
Bra013614.1-P	Field mustard	nucleus	61.09	55.99
CDX94096	Canola	nucleus	62.61	55.23
Solyc11g012290.1.1	Tomato	cytosol	59.88	54.87
PGSC0003DMT400034549	Potato	cytosol	60.49	54.82
TraesCS7D01G242300.1	Wheat	plastid	37.99	52.74
AT4G22360.1	Thale cress	nucleus	61.4	52.47
GSMUA_Achr1P19520_001	Banana	cytosol	51.98	46.34
GSMUA_Achr3P11900_001	Banana	cytosol	49.85	44.93
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	41.03	40.06
KXG27277	Sorghum	cytosol	46.81	38.99
Os04t0665500-01	Rice	cytosol	44.68	37.98
Os08t0502800-01	Rice	nucleus	46.2	37.44
Zm00001d026541_P001	Maize	cytosol	44.07	36.99
HORVU2Hr1G109030.1	Barley	cytosol	45.59	36.59
KXG25652	Sorghum	nucleus	47.42	36.45
TraesCS2A01G488300.1	Wheat	cytosol	45.9	36.39
TraesCS2D01G488600.1	Wheat	cytosol	45.9	36.3
Zm00001d052873_P001	Maize	cytosol	46.81	36.24
TraesCS7A01G243700.1	Wheat	cytosol	45.9	36.12
Zm00001d001937_P003	Maize	cytosol	46.2	35.35
TraesCS2B01G515900.1	Wheat	plastid	37.08	34.37
KRH76945	Soybean	nucleus	31.31	30.56
KRH28515	Soybean	nucleus	31.61	30.06
KRH27569	Soybean	nucleus	13.07	29.05
KRH76467	Soybean	nucleus	11.55	28.79
KRH28989	Soybean	mitochondrion, plastid	11.55	28.79
KRH77941	Soybean	nucleus	12.16	28.78

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100804281	MapMan:35.2	EMBL:ACUP02010293	InterPro:DEK_C	EnsemblPlantsGene:GLYMA_17G008600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MR08	InterPro:IPR036885	EnsemblPlants:KRH01994
ProteinID:KRH01994	ProteinID:KRH01994.1	ProteinID:KRH01995.1	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844
PANTHER:PTHR13844:SF10	SMART:SM00151	SUPFAM:SSF109715	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI0000E627F6	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:711744..716737

Molecular Weight (calculated)

36766.3 Da

IEP (calculated)

7.298

GRAVY (calculated)

-0.419

Length

329 amino acids

Sequence
(BLAST)

001: MVTDQDIAKG VESLLRHSDP NSITTVNGVV QQLEAKLGLD LSHKASFIRD QIDHLLRSQP QTFAPHPPPL HKDYFAPHTQ LHFPTTHFAP HFALHDEINF
101: LQHPHPPPPR KVETFPPQNV APPQVPKESV QTGSKRRGGA GGLNKVCGVS PELQAVVGEP AMPRTEIVRQ LWAYIKKNNL QDPGNKRKII CDDALRLVFE
201: TDCTDMFKMN QLLAKHIIPL GPTKESQAKR VKVDTEIKTE SAEPAPSTVA ISEALAKFLG TEGREMQQSE AIRLVWEYIK LHHLEDPLNS MVILCDAKLQ
301: ELLGCESISA LGIPEMLARH HLFKQSDTR

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.