Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98747 | Canola | nucleus | 96.98 | 96.71 |
| CDX94096 | Canola | nucleus | 95.88 | 93.57 |
| Bra020851.1-P | Field mustard | nucleus | 75.27 | 85.36 |
| AT4G22360.1 | Thale cress | nucleus | 87.09 | 82.34 |
| Bra013614.1-P | Field mustard | nucleus | 81.04 | 82.17 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 60.44 | 63.95 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 60.16 | 63.11 |
| KRH01994 | Soybean | cytosol | 56.32 | 62.31 |
| KRH51159 | Soybean | cytosol | 55.77 | 61.14 |
| Solyc11g012290.1.1 | Tomato | cytosol | 52.75 | 53.48 |
| PGSC0003DMT400034549 | Potato | cytosol | 53.02 | 53.17 |
| TraesCS7D01G242300.1 | Wheat | plastid | 32.97 | 50.63 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 46.15 | 46.03 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 46.43 | 45.8 |
| KXG27277 | Sorghum | cytosol | 42.58 | 39.24 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 36.26 | 39.17 |
| Os08t0502800-01 | Rice | nucleus | 43.41 | 38.92 |
| Os04t0665500-01 | Rice | cytosol | 40.93 | 38.5 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 42.58 | 37.35 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 42.03 | 37.32 |
| Zm00001d052873_P001 | Maize | cytosol | 43.41 | 37.18 |
| KXG25652 | Sorghum | nucleus | 43.68 | 37.15 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 42.31 | 37.02 |
| Zm00001d026541_P001 | Maize | cytosol | 39.84 | 36.99 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 41.76 | 36.36 |
| TraesCS2B01G515900.1 | Wheat | plastid | 35.16 | 36.06 |
| Zm00001d001937_P003 | Maize | cytosol | 41.76 | 35.35 |
| Bra011519.1-P | Field mustard | plastid | 12.91 | 34.06 |
| Bra017644.1-P | Field mustard | plastid | 12.36 | 31.91 |
| Bra023201.1-P | Field mustard | mitochondrion | 9.62 | 30.43 |
| Bra033879.1-P | Field mustard | mitochondrion | 9.34 | 29.31 |
| Bra022384.1-P | Field mustard | nucleus | 31.04 | 25.06 |
| Bra034617.1-P | Field mustard | cytosol | 5.77 | 25.0 |
| Bra031985.1-P | Field mustard | mitochondrion | 9.89 | 23.53 |
Protein Annotations
| EnsemblPlants:Bra019378.1 | EnsemblPlants:Bra019378.1-P | EnsemblPlantsGene:Bra019378 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:DEK_C | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain |
| PANTHER:PTHR13844 | PANTHER:PTHR13844:SF37 | PFAM:PF02201 | PFAM:PF08766 | SEG:seg | SMART:SM00151 |
| SUPFAM:SSF109715 | SUPFAM:SSF47592 | UniParc:UPI0002540D94 | UniProt:M4DS85 | MapMan:35.2 | : |
Description
AT4G22360 (E=7e-130) | SWIB complex BAF60b domain-containing protein
Coordinates
chrA03:+:24541675..24543319
Molecular Weight (calculated)
40271.1 Da
IEP (calculated)
7.943
GRAVY (calculated)
-0.533
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDLAKG VETLLRQSDP SSLTSLTSVV QQLEAKLGLD LTEKTSFIRD QINLLLRPHP PISSSSASAS ASTAQSPPPP SQQLHFGVNV PGKGHFALQH
101: PSQFSQQYPH FALQPPPPPP YHAYDLNFRQ PYPPYMPPPQ HQHNQLQSPR QGPSVLVSQA PKESVPPAGT KRKGGPGGLN KVCRVSPELE VVVGEPALPR
201: TEIVRQLWAY IRKNNLQDPS NKRKIICDDA LRVVFETDCT DMFKMNKLLA KHILPLDPSK DSGQAKRAKA EVETKTETTE PVSSTSAVAL SEPLAKFFGT
301: GETEMTEEAI IRRVWEYIKL NNLEDPANPM AIQCDEKLRD LLGCESISAV GINEMLRRHM YKPS
101: PSQFSQQYPH FALQPPPPPP YHAYDLNFRQ PYPPYMPPPQ HQHNQLQSPR QGPSVLVSQA PKESVPPAGT KRKGGPGGLN KVCRVSPELE VVVGEPALPR
201: TEIVRQLWAY IRKNNLQDPS NKRKIICDDA LRVVFETDCT DMFKMNKLLA KHILPLDPSK DSGQAKRAKA EVETKTETTE PVSSTSAVAL SEPLAKFFGT
301: GETEMTEEAI IRRVWEYIKL NNLEDPANPM AIQCDEKLRD LLGCESISAV GINEMLRRHM YKPS
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.