Factsheet for GSMUA_Achr3P11900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19520_001	Banana	cytosol	85.21	84.28
VIT_00s0187g00240.t01	Wine grape	nucleus	49.86	52.91
VIT_00s0187g00190.t01	Wine grape	cytosol	50.14	52.74
CDY27449	Canola	nucleus	44.93	50.62
KRH51159	Soybean	cytosol	45.48	50.0
CDX76378	Canola	cytosol	46.58	49.85
KRH01994	Soybean	cytosol	44.93	49.85
VIT_19s0090g01460.t01	Wine grape	cytosol	44.93	49.55
Bra020851.1-P	Field mustard	nucleus	42.74	48.6
KRH46275	Soybean	cytosol	43.84	48.48
KXG27277	Sorghum	cytosol	52.33	48.35
CDX79150	Canola	nucleus	45.75	47.71
Os04t0665500-01	Rice	cytosol	49.86	47.03
CDX98747	Canola	nucleus	46.85	46.85
Solyc11g012290.1.1	Tomato	cytosol	45.48	46.24
Bra019378.1-P	Field mustard	cytosol	46.03	46.15
TraesCS2D01G488600.1	Wheat	cytosol	52.33	45.91
HORVU2Hr1G109030.1	Barley	cytosol	51.51	45.85
Bra013614.1-P	Field mustard	nucleus	44.93	45.68
TraesCS2A01G488300.1	Wheat	cytosol	51.78	45.54
PGSC0003DMT400034549	Potato	cytosol	45.21	45.45
Zm00001d026541_P001	Maize	cytosol	48.77	45.41
CDX94096	Canola	nucleus	45.21	44.24
Zm00001d001937_P003	Maize	cytosol	51.78	43.95
TraesCS2B01G515900.1	Wheat	plastid	42.19	43.38
AT4G22360.1	Thale cress	nucleus	45.21	42.86
GSMUA_Achr2P13370_001	Banana	cytosol	6.58	37.5
GSMUA_Achr4P28200_001	Banana	nucleus	31.51	36.39
GSMUA_AchrUn_...	Banana	cytosol	6.58	34.29
GSMUA_Achr7P26330_001	Banana	plastid	11.23	29.29
GSMUA_Achr3P30180_001	Banana	plastid	11.23	29.29
GSMUA_Achr7P17340_001	Banana	mitochondrion	10.41	29.23
GSMUA_Achr10P...	Banana	plastid	9.59	24.82
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	8.49	23.85
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	8.49	15.27

Protein Annotations

EnsemblPlants:GSMUA_Achr3P11900_001	EnsemblPlants:GSMUA_Achr3T11900_001	EnsemblPlantsGene:GSMUA_Achr3G11900_001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DEK_C	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF10	PFAM:PF02201	PFAM:PF08766	SEG:seg	SMART:SM00151
SUPFAM:SSF109715	SUPFAM:SSF47592	UniParc:UPI000294B31E	UniProt:M0SDV7	MapMan:35.2	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_187.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G11900_001]

Coordinates

chr3:-:8831414..8836376

Molecular Weight (calculated)

39648.8 Da

IEP (calculated)

8.238

GRAVY (calculated)

-0.292

Length

365 amino acids

Sequence
(BLAST)

001: MVSDQEIASC VESVLRQSDP AAASLPDVVR QVEAKLGLDL SHKAAFIRDQ IELLLRPSVH PLPPHPQSQA AAGPHNPYIL LHHLPLQQQI PPPKPTSSAG
101: VAAPAPFPQH HHPGIAFQYP PPPPLPAAAV VAAYHLQQQL HQAPQGVPAA VGLAPVTVAM AAPKESAPPR AKRKGGPGGL NKVCGVSPEL QPIVGEAAMS
201: RTQIVKQLWA YIRKNNLQDP NNKRKIICND ELRRVFETDS TDMFKMNKLL SKHIIPLDYP KDTGAESKKL KAADVSATEI TKPDSDEYPM VISDSLAKFF
301: GREEREILKS VALSRVWDYI KANQLEDSAN SSILCDPKLQ ELFGCESLPV SGISDLLANH LLKKS

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.