Factsheet for TraesCS2B01G515900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G109030.1	Barley	cytosol	95.77	82.93
TraesCS2D01G488600.1	Wheat	cytosol	95.77	81.73
TraesCS2A01G488300.1	Wheat	cytosol	95.21	81.45
Os04t0665500-01	Rice	cytosol	72.11	66.15
KXG27277	Sorghum	cytosol	69.01	62.03
Zm00001d026541_P001	Maize	cytosol	65.07	58.93
Zm00001d001937_P003	Maize	cytosol	70.42	58.14
GSMUA_Achr1P19520_001	Banana	cytosol	45.07	43.36
GSMUA_Achr3P11900_001	Banana	cytosol	43.38	42.19
VIT_19s0090g01460.t01	Wine grape	cytosol	38.59	41.39
VIT_00s0187g00240.t01	Wine grape	nucleus	38.87	40.12
VIT_00s0187g00190.t01	Wine grape	cytosol	38.87	39.77
KRH46275	Soybean	cytosol	35.77	38.48
KRH51159	Soybean	cytosol	35.77	38.25
CDY27449	Canola	nucleus	34.65	37.96
KRH01994	Soybean	cytosol	34.37	37.08
CDX76378	Canola	cytosol	34.65	36.07
CDX98747	Canola	nucleus	36.62	35.62
Bra020851.1-P	Field mustard	nucleus	31.83	35.2
Bra019378.1-P	Field mustard	cytosol	36.06	35.16
Solyc11g012290.1.1	Tomato	cytosol	34.93	34.54
PGSC0003DMT400034549	Potato	cytosol	35.21	34.44
CDX79150	Canola	nucleus	33.8	34.29
CDX94096	Canola	nucleus	35.49	33.78
Bra013614.1-P	Field mustard	nucleus	34.08	33.7
AT4G22360.1	Thale cress	nucleus	36.06	33.25
TraesCS5B01G406200.2	Wheat	nucleus	24.79	24.18
TraesCS5B01G403900.1	Wheat	plastid	9.3	23.57
TraesCS5B01G108300.1	Wheat	plastid	10.14	23.53
TraesCS6B01G116900.1	Wheat	plastid	7.89	19.58

Protein Annotations

EnsemblPlants:TraesCS2B01G515900.1	EnsemblPlantsGene:TraesCS2B01G515900	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF19
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2	:

Description

No Description!

Coordinates

chr2B:-:710897577..710900520

Molecular Weight (calculated)

37970.5 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.312

Length

355 amino acids

Sequence
(BLAST)

001: MDLFFGPRLQ PPPPPPKAQN QNPPPLPASA PAPAPAMTQA LPQPQLPLEV QQQQQMLQMQ QQQFAAIQPQ FIFQTMPQLP PVVSGGGAAA TNNAAAVSAP
101: PPAVPAMAFY PPPPLAFRYA NALGGVATGG TVSFQQPAPG VGAITSPTAA PQAAGDNKES ASKRKRGGPG GLNKVCAISP ELQTVVGETA MSRTQIVKQL
201: WAYIRQNNLQ DPDDKRKIIC NDELRIVFGT DSTDMFKMNK LLAKHITPLD PKDQPSEAKK IKATNATPQQ MPTINQNQPY VVVSDALAKF LGVEGTVPHD
301: DALKYLWDYI KANQLEDPAS ASILCDSSLQ ELFGCESIPA SGLPDLLAHH FIQRT

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.