Factsheet for TraesCS6B01G116900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G113700.1	Wheat	plastid	96.5	95.83
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	96.5	94.52
Os02t0130000-01	Rice	mitochondrion, plastid	56.64	61.83
GSMUA_AchrUn_...	Banana	cytosol	30.07	61.43
HORVU6Hr1G015440.1	Barley	plastid	81.82	56.25
Zm00001d015127_P001	Maize	mitochondrion	46.15	55.46
GSMUA_Achr7P17340_001	Banana	mitochondrion	47.55	52.31
VIT_02s0087g00810.t01	Wine grape	mitochondrion	41.26	51.3
CDY12300	Canola	mitochondrion	32.87	50.54
AT2G35605.1	Thale cress	mitochondrion	37.76	49.54
CDY49157	Canola	mitochondrion	32.17	49.46
CDY51761	Canola	mitochondrion	46.15	49.25
Bra023201.1-P	Field mustard	mitochondrion	38.46	47.83
VIT_15s0024g00650.t01	Wine grape	mitochondrion	42.66	47.66
CDY50950	Canola	mitochondrion	38.46	47.41
Bra033879.1-P	Field mustard	mitochondrion	38.46	47.41
Zm00001d053979_P001	Maize	mitochondrion	44.06	47.01
KRH28989	Soybean	mitochondrion, plastid	43.36	46.97
KRH76467	Soybean	nucleus	43.36	46.97
Bra031985.1-P	Field mustard	mitochondrion	49.65	46.41
CDY47689	Canola	mitochondrion	37.76	46.15
Solyc08g005590.2.1	Tomato	nucleus	39.16	45.9
CDY50651	Canola	plastid	46.85	45.89
AT3G03590.1	Thale cress	mitochondrion, plastid	45.45	45.45
PGSC0003DMT400047544	Potato	plastid	38.46	45.08
AT1G31760.1	Thale cress	mitochondrion	34.97	44.64
Solyc08g075400.2.1	Tomato	plastid	38.46	44.35
EES06225	Sorghum	mitochondrion	40.56	44.27
PGSC0003DMT400004968	Potato	plastid	37.76	43.55
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	36.36	40.0
TraesCS5B01G108300.1	Wheat	plastid	40.56	37.91
TraesCS5B01G403900.1	Wheat	plastid	37.06	37.86
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	37.06	26.11
TraesCS5B01G406200.2	Wheat	nucleus	27.27	10.71
TraesCS2B01G515900.1	Wheat	plastid	19.58	7.89

Protein Annotations

EnsemblPlants:TraesCS6B01G116900.1	EnsemblPlantsGene:TraesCS6B01G116900	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2	:

Description

No Description!

Coordinates

chr6B:+:106467784..106469793

Molecular Weight (calculated)

15122.7 Da

IEP (calculated)

11.181

GRAVY (calculated)

-0.159

Length

143 amino acids

Sequence
(BLAST)

001: MSTAAATVFR GCRALMSSSA AAKGGKKTAS AAAAAAKGAK KPASAAAKPK AAKKPVDPNN LRGIMRPVPV SDALRKFGGA AHISRSGVLK IVWDYIKAND
101: LQNPLNKREI ICDEKLKTIF PGRDTVHMME VTKLLSPHFV KTI

Best Arabidopsis Sequence Match ( AT3G03590.1 )
(BLAST)

001: MSSVAAMVFR GARSLLAPAS RATSSLVSAG STKKPAAKPK AKAKPKPKAK SDSPAKKTPR STGIFKVTPV SPVLAQFLGT GETSRTDAIK GIWTYIKSHD
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA

Arabidopsis Description

At3g03590 [Source:UniProtKB/TrEMBL;Acc:Q9SS61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.