Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G408400.1 | Wheat | plastid | 96.43 | 97.12 |
| TraesCS5A01G398800.1 | Wheat | plastid | 95.71 | 95.71 |
| Os03t0761000-01 | Rice | nucleus | 73.57 | 71.53 |
| EER90846 | Sorghum | plastid | 67.86 | 66.43 |
| Zm00001d013221_P001 | Maize | plastid | 65.0 | 62.76 |
| TraesCS5B01G108300.1 | Wheat | plastid | 50.71 | 46.41 |
| TraesCS6B01G116900.1 | Wheat | plastid | 37.86 | 37.06 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 26.43 | 10.16 |
| TraesCS2B01G515900.1 | Wheat | plastid | 23.57 | 9.3 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G403900.1 | EnsemblPlantsGene:TraesCS5B01G403900 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF8 |
| PFAM:PF02201 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5B:-:580288929..580290383
Molecular Weight (calculated)
14923.6 Da
IEP (calculated)
11.676
GRAVY (calculated)
0.095
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASMLTTV FSPLALLRPS ASFARLRRAA PAAAAVVVRA AAKSTTAAAA PKKKRAAPTG ITMPRPVSPA LQAFMGAAEV PRTEAMKRIW AYIKQNNLQD
101: PGDKKVIVCD EKLKALFAGR ERVGFLEIAK LLSPHFVKTP
101: PGDKKVIVCD EKLKALFAGR ERVGFLEIAK LLSPHFVKTP
001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.