CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013221_P001	Maize	plastid	90.91	89.66
Os03t0761000-01	Rice	nucleus	73.43	72.92
TraesCS5B01G403900.1	Wheat	plastid	66.43	67.86
TraesCS5D01G408400.1	Wheat	plastid	65.03	66.91
TraesCS5A01G398800.1	Wheat	plastid	65.03	66.43
EES17082	Sorghum	plastid	46.85	45.58
EES06225	Sorghum	mitochondrion	36.36	39.69
EER93399	Sorghum	nucleus	25.17	11.04
KXG27277	Sorghum	cytosol	27.27	9.87
KXG25652	Sorghum	nucleus	27.97	9.35

Protein Annotations

EnsemblPlants:EER90846	EnsemblPlantsGene:SORBI_3001G081700	EntrezGene:8085909	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	ProteinID:EER90846	ProteinID:EER90846.1	RefSeq:XP_002463848.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0001A822F3	UniProt:C5X052	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:6306746..6309935

Molecular Weight (calculated)

15141.6 Da

IEP (calculated)

11.112

GRAVY (calculated)

0.031

Length

143 amino acids

Sequence
(BLAST)

001: MAAASSMLTA ASLSFSPLPA PRLPAAASFA PPRRAAAALV VRAAAASSKS PAAAETAPKK KRATGITQPK PVSPALQAIV GEPVIPRTEA LKRLWAYIKE
101: HNLQDPSDKK VVICDEKLKV LFAGRERVGF LEIAKLLNPH FVK

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.