Factsheet for Zm00001d013221_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90846	Sorghum	plastid	89.66	90.91
Os03t0761000-01	Rice	nucleus	70.34	70.83
TraesCS5B01G403900.1	Wheat	plastid	62.76	65.0
TraesCS5A01G398800.1	Wheat	plastid	62.07	64.29
TraesCS5D01G408400.1	Wheat	plastid	61.38	64.03
Zm00001d035321_P001	Maize	plastid	44.14	44.76
Zm00001d015127_P001	Maize	mitochondrion	31.03	37.82
Zm00001d053979_P001	Maize	mitochondrion	34.48	37.31
Zm00001d034159_P002	Maize	cytosol	24.83	13.85
Zm00001d013204_P001	Maize	nucleus	27.59	10.42
Zm00001d052873_P001	Maize	cytosol	26.9	9.18
Zm00001d026541_P001	Maize	cytosol	24.14	8.93
Zm00001d001937_P003	Maize	cytosol	26.21	8.84

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	UniProt:A0A1D6GGL6	ProteinID:AQK62694.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000221F799	EnsemblPlantsGene:Zm00001d013221
EnsemblPlants:Zm00001d013221_P001	EnsemblPlants:Zm00001d013221_T001	SEG:seg	:	:	:

Description

SWIb domain-containing protein

Coordinates

chr5:+:6715039..6717199

Molecular Weight (calculated)

15386.9 Da

IEP (calculated)

11.242

GRAVY (calculated)

0.005

Length

145 amino acids

Sequence
(BLAST)

001: MSPASSMLTA VSLSSPLPAP RLRAAAAASS FAPPRRAAVA LVVRAASASS KSPATAEAAP KKKRATGITQ PKSVSPALQA IVGDPVIPRT EVLKRLWAYI
101: KEHNLQDPSD KKVVVCDEKL KVLFAGRERV GFLEIAKLLN PHFVK

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.