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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 7
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 nucleus: 19621931
plastid: 21433289
nucleus: 26035336
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G408400.1 Wheat plastid 71.53 74.1
TraesCS5B01G403900.1 Wheat plastid 71.53 73.57
EER90846 Sorghum plastid 72.92 73.43
TraesCS5A01G398800.1 Wheat plastid 70.83 72.86
Zm00001d013221_P001 Maize plastid 70.83 70.34
Os02t0130000-01 Rice mitochondrion, plastid 34.03 37.4
Os12t0507500-00 Rice plastid 34.03 27.22
Os04t0665500-01 Rice cytosol 28.47 10.59
Os08t0502800-01 Rice nucleus 27.08 9.61
Os03t0764450-00 Rice nucleus 27.08 8.21
Protein Annotations
Gene3D:1.10.245.10MapMan:35.2EntrezGene:4334190ProteinID:AAK63939.1ProteinID:ABF99004.1EMBL:AK243180
ProteinID:BAS86506.1GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR036885EnsemblPlantsGene:Os03g0761000
EnsemblPlants:Os03t0761000-01PFAM:PF02201PANTHER:PTHR13844PANTHER:PTHR13844:SF8UniProt:Q94H99SMART:SM00151
SUPFAM:SSF47592InterPro:SWIB_MDM2_dom_sfInterPro:SWIB_MDM2_domainInterPro:SWIB_domainUniParc:UPI00000A89D0RefSeq:XP_015631942.1
SEG:seg:::::
Description
SWIB/MDM2 domain containing protein. (Os03t0761000-01)
Coordinates
chr3:-:31469926..31471769
Molecular Weight (calculated)
15038.5 Da
IEP (calculated)
11.493
GRAVY (calculated)
0.143
Length
144 amino acids
Sequence
(BLAST)
001: MASASMLSAA SLSLSPSPLA ALRPPRPAAS FALPRRAAAA AVAVRAAAAA SNSPAAAAQK KRAATGLTKP RLVSPALQAV VGAAEIPRTE ALKRLWAYIK
101: QHNLQDPADK KVIVCDEKLK VLFAGQERVG FLEVAKLLNP HFVK
Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)
001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
Arabidopsis Description
SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.