Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G403900.1 | Wheat | plastid | 95.71 | 95.71 |
| TraesCS5D01G408400.1 | Wheat | plastid | 93.57 | 94.24 |
| Os03t0761000-01 | Rice | nucleus | 72.86 | 70.83 |
| EER90846 | Sorghum | plastid | 66.43 | 65.03 |
| Zm00001d013221_P001 | Maize | plastid | 64.29 | 62.07 |
| TraesCS5A01G105100.1 | Wheat | plastid | 50.71 | 45.81 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 35.71 | 34.25 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 25.71 | 10.53 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 26.43 | 8.92 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 25.71 | 8.61 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G398800.1 | EnsemblPlantsGene:TraesCS5A01G398800 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF8 |
| PFAM:PF02201 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00151 | SUPFAM:SSF47592 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:-:592622150..592623539
Molecular Weight (calculated)
14979.7 Da
IEP (calculated)
11.676
GRAVY (calculated)
0.182
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAASMLTTV FSPLALLRPT ASFARLRRAA PAAAVVVRAA AKSTAAAAAA PKKKRAAPTG ITMPRPVSPA LQAFMGAAEV PRTEAMKRIW AYIKQNNLQD
101: PADKKVIVCD EKLKALFAGR ERVGFLEIAK LLSLHFVKTP
101: PADKKVIVCD EKLKALFAGR ERVGFLEIAK LLSLHFVKTP
001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
Arabidopsis Description
SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.