Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G411700.1 | Wheat | nucleus | 96.49 | 97.06 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 97.95 | 92.03 |
| EER93399 | Sorghum | nucleus | 73.98 | 77.61 |
| Zm00001d034159_P002 | Maize | cytosol | 54.68 | 71.92 |
| HORVU5Hr1G097590.1 | Barley | nucleus | 71.05 | 68.07 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 56.43 | 61.08 |
| Zm00001d013204_P001 | Maize | nucleus | 66.67 | 59.38 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 11.11 | 59.38 |
| KRH76945 | Soybean | nucleus | 56.14 | 56.97 |
| KRH28515 | Soybean | nucleus | 57.02 | 56.36 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 46.2 | 53.02 |
| PGSC0003DMT400001975 | Potato | nucleus | 42.11 | 48.65 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 17.54 | 48.0 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 39.18 | 47.02 |
| Os03t0764450-00 | Rice | nucleus | 59.06 | 42.53 |
| CDX92300 | Canola | nucleus | 49.71 | 37.61 |
| Bra022384.1-P | Field mustard | nucleus | 49.42 | 37.47 |
| AT3G19080.4 | Thale cress | nucleus | 50.0 | 36.85 |
| CDX99270 | Canola | nucleus | 49.12 | 36.21 |
| AT1G49520.1 | Thale cress | nucleus | 34.21 | 31.45 |
| TraesCS5A01G105100.1 | Wheat | plastid | 12.28 | 27.1 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 32.75 | 26.79 |
| TraesCS5A01G398800.1 | Wheat | plastid | 10.53 | 25.71 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 30.99 | 25.54 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 10.23 | 23.97 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G401500.2 | EnsemblPlantsGene:TraesCS5A01G401500 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DEK_C | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | ncoils:Coil |
| PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 | PFAM:PF02201 | PFAM:PF08766 | SEG:seg | SMART:SM00151 |
| SUPFAM:SSF109715 | SUPFAM:SSF47592 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:594321655..594326725
Molecular Weight (calculated)
38294.6 Da
IEP (calculated)
4.548
GRAVY (calculated)
-0.982
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDSELVER LREVLRESDL TTTTTGALRR RLEEDFGVDL SDKKTFVREQ VDLLLSEFAD KAEPEDAPVE EEDPGEVTPE AGEGGEEKGE GDEEGAEQQE
101: GEGEEEEEEE EEEEEEEESG GGRKKKRRLG DGKKKAGGFT KLCSISPALQ EFVGASECAR TEVVKKLWAY IRENNLQDPS NRRKILCDDN LKKIFNVNSI
201: DMFQMNKALT KHIWPLDSDG PVSPKEKSTP KEKSTPKGKP QKRDRSEGNK QKGGSSGSTS GLLAPLVLSD DLAKFIGTGE SMLSRSDVVK RMWDYIKENN
301: LQDPSDRRKI ICDEKLKDLF QVESFTGFTV SKLLNPHFTK AK
101: GEGEEEEEEE EEEEEEEESG GGRKKKRRLG DGKKKAGGFT KLCSISPALQ EFVGASECAR TEVVKKLWAY IRENNLQDPS NRRKILCDDN LKKIFNVNSI
201: DMFQMNKALT KHIWPLDSDG PVSPKEKSTP KEKSTPKGKP QKRDRSEGNK QKGGSSGSTS GLLAPLVLSD DLAKFIGTGE SMLSRSDVVK RMWDYIKENN
301: LQDPSDRRKI ICDEKLKDLF QVESFTGFTV SKLLNPHFTK AK
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.