CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034159_P002	Maize	cytosol	65.03	81.54
TraesCS5D01G411700.1	Wheat	nucleus	78.22	75.0
TraesCS5A01G401500.2	Wheat	nucleus	77.61	73.98
Zm00001d013204_P001	Maize	nucleus	84.36	71.61
TraesCS5B01G406200.2	Wheat	nucleus	78.83	70.6
GSMUA_Achr2P13370_001	Banana	cytosol	12.27	62.5
GSMUA_Achr4P28200_001	Banana	nucleus	60.12	62.03
KRH76945	Soybean	nucleus	61.35	59.35
KRH28515	Soybean	nucleus	62.58	58.96
HORVU5Hr1G097590.1	Barley	nucleus	63.5	57.98
VIT_07s0197g00070.t01	Wine grape	nucleus	51.84	56.71
VIT_03s0063g01070.t01	Wine grape	nucleus	19.63	51.2
PGSC0003DMT400001975	Potato	nucleus	41.41	45.61
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	38.65	44.21
Os03t0764450-00	Rice	nucleus	63.19	43.37
CDX92300	Canola	nucleus	52.76	38.05
AT3G19080.4	Thale cress	nucleus	53.68	37.72
Bra022384.1-P	Field mustard	nucleus	51.53	37.25
CDX99270	Canola	nucleus	52.45	36.85
AT1G49520.1	Thale cress	nucleus	35.58	31.18
EES17082	Sorghum	plastid	12.58	27.89
EES06225	Sorghum	mitochondrion	10.74	26.72
KXG27277	Sorghum	cytosol	32.21	26.58
KXG25652	Sorghum	nucleus	33.44	25.47
EER90846	Sorghum	plastid	11.04	25.17

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.245.10	MapMan:35.2	EntrezGene:8086192	UniProt:C5WZA9	ncoils:Coil
InterPro:DEK_C	EnsemblPlants:EER93399	ProteinID:EER93399	ProteinID:EER93399.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF23
SMART:SM00151	EnsemblPlantsGene:SORBI_3001G079100	SUPFAM:SSF109715	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	unigene:Sbi.17406	UniParc:UPI0001A82CBB	RefSeq:XP_002466401.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:6073596..6079988

Molecular Weight (calculated)

36793.0 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.971

Length

326 amino acids

Sequence
(BLAST)

001: MVSDSELVER LQEVLRSSDL NTTTTAALRR RLEEDFGADL SHKKAFIREQ VDLFLAEVAA KDEPEEPKEE EPEEAPVPKE EEGEGVEEEG EGEGEEEEEE
101: EEEEEEEDGD SSGARKKQRG NDGKKRGGGF TKLCSLSPAL QEFVGASELA RTEVVKKLWA YIRENNLQDQ NNRRKILPDE RLRKIFNVNS IDMFQMNKAL
201: TKHIWPLNSE GPVSPDRSTP KEKPQKRDRN EGKKQKGGSS GAGSGLLVPL QLSDDLVKFI GTGESMLSRS DVVKKMWDYI KENNLQDPSD RRKIICDEKL
301: KDLLGVETFT GFTVSKLLAP HFTKTK

Best Arabidopsis Sequence Match ( AT1G49520.1 )
(BLAST)

001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE

Arabidopsis Description

At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.