CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28515	Soybean	nucleus	95.55	93.06
GSMUA_Achr2P13370_001	Banana	cytosol	12.76	67.19
VIT_07s0197g00070.t01	Wine grape	nucleus	58.46	66.11
GSMUA_Achr4P28200_001	Banana	nucleus	60.83	64.87
EER93399	Sorghum	nucleus	59.35	61.35
Zm00001d034159_P002	Maize	cytosol	45.1	58.46
TraesCS5D01G411700.1	Wheat	nucleus	57.27	56.76
TraesCS5A01G401500.2	Wheat	nucleus	56.97	56.14
TraesCS5B01G406200.2	Wheat	nucleus	57.27	53.02
Zm00001d013204_P001	Maize	nucleus	52.23	45.83
HORVU5Hr1G097590.1	Barley	nucleus	46.29	43.7
Bra022384.1-P	Field mustard	nucleus	54.01	40.35
CDX92300	Canola	nucleus	53.71	40.04
CDX99270	Canola	nucleus	53.71	39.01
AT3G19080.4	Thale cress	nucleus	53.41	38.79
Os03t0764450-00	Rice	nucleus	46.29	32.84
AT1G49520.1	Thale cress	nucleus	35.31	31.99
KRH01994	Soybean	cytosol	30.56	31.31
KRH51159	Soybean	cytosol	30.56	31.02
KRH46275	Soybean	cytosol	29.38	30.0
KRH77941	Soybean	nucleus	11.87	28.78
KRH27569	Soybean	nucleus	11.57	26.35
KRH76467	Soybean	nucleus	10.09	25.76
KRH28989	Soybean	mitochondrion, plastid	10.09	25.76

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.245.10	EntrezGene:100784838	MapMan:35.2	EMBL:ACUP02000647	InterPro:DEK_C
EnsemblPlantsGene:GLYMA_01G183600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1J943	InterPro:IPR036885
EnsemblPlants:KRH76945	ProteinID:KRH76945	ProteinID:KRH76945.1	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844
PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI0002336FCB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:51879893..51885007

Molecular Weight (calculated)

38886.4 Da

IEP (calculated)

4.749

GRAVY (calculated)

-1.068

Length

337 amino acids

Sequence
(BLAST)

001: MVSESELIGR LREFLRSSDL NTTTTATVRR QLEADFGIDL SDRKAFIREQ VDLFLQTEHN QPQQEERQND DVEEQEEDAP NNPEQSQPSD SKEETDEEEE
101: GEEEEDKPEQ AKNAKKNKGR SNKLGDEVVK KRGGGFCKLC SLSPQLQEFM EAPEMARTEV VKQLWVYIRE KNLQDPNNRR NIICDERLRS LFNVNSINMF
201: QMNKALSKHI WPLESDDVVQ VKSTPKEKQK KQERDDDSDE AKKKEKRQKG GGKSGFLAPL QLSDALVNFL GTGESELART DVIKRMWDYI KGNNLQDPSD
301: KRKIICDEKL KELFDVDSFT GFTVTKLLAP HFIKTEQ

Best Arabidopsis Sequence Match ( AT1G49520.1 )
(BLAST)

001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE

Arabidopsis Description

At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.