Factsheet for VIT_07s0197g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13370_001	Banana	cytosol	13.76	64.06
KRH76945	Soybean	nucleus	66.11	58.46
KRH28515	Soybean	nucleus	66.44	57.23
GSMUA_Achr4P28200_001	Banana	nucleus	57.38	54.11
VIT_03s0063g01070.t01	Wine grape	nucleus	22.15	52.8
EER93399	Sorghum	nucleus	56.71	51.84
TraesCS5D01G411700.1	Wheat	nucleus	54.03	47.35
TraesCS5A01G401500.2	Wheat	nucleus	53.02	46.2
Zm00001d034159_P002	Maize	cytosol	38.93	44.62
TraesCS5B01G406200.2	Wheat	nucleus	53.69	43.96
Zm00001d013204_P001	Maize	nucleus	55.03	42.71
CDX92300	Canola	nucleus	51.01	33.63
Bra022384.1-P	Field mustard	nucleus	50.67	33.48
HORVU5Hr1G097590.1	Barley	nucleus	39.93	33.33
AT3G19080.4	Thale cress	nucleus	51.34	32.97
CDX99270	Canola	nucleus	51.01	32.76
VIT_15s0024g00650.t01	Wine grape	mitochondrion	13.09	30.47
VIT_02s0087g00810.t01	Wine grape	mitochondrion	11.41	29.57
AT1G49520.1	Thale cress	nucleus	36.58	29.3
VIT_19s0090g01460.t01	Wine grape	cytosol	30.54	27.49
VIT_00s0187g00240.t01	Wine grape	nucleus	31.21	27.03
VIT_03s0091g00430.t01	Wine grape	plastid	13.09	26.9
VIT_00s0187g00190.t01	Wine grape	cytosol	30.87	26.51
Os03t0764450-00	Rice	nucleus	40.94	25.68

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100852962	wikigene:100852962	MapMan:35.2	EMBL:AM455739	ProteinID:CAN83123
ProteinID:CAN83123.1	ProteinID:CCB48254	ProteinID:CCB48254.1	InterPro:DEK_C	UniProt:F6H7R2	EMBL:FN595251
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EntrezGene:LOC100852962	wikigene:LOC100852962
PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	TIGR:TC66463	UniParc:UPI00015CDF10
ArrayExpress:VIT_07s0197g00070	EnsemblPlantsGene:VIT_07s0197g00070	EnsemblPlants:VIT_07s0197g00070.t01	unigene:Vvi.25274	RefSeq:XP_003632462	RefSeq:XP_003632462.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:14568336..14573197

Molecular Weight (calculated)

33743.4 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.966

Length

298 amino acids

Sequence
(BLAST)

001: MVSDSELVAR LHEFLRSSDL NTTTTAIVRR KLEEDFGIDL SGKKAFIREH VDLFLQSQLE KAEEDEGDGG EEEEEEHKSN VKSEGSNGSD SKDENDDDDD
101: EEEEVEESSN GKGAKKRGSK KSNKEVKKRG GGFCKLCSLS PELQKFIGVP ELARTEVVKQ LWVHIREKDL QDPNNRRNII CDETLRALFG VDSINMFQMN
201: KALSKHIWPL DSDDAAPVKP TPKEKQRKQE RDDSDEPKRK QKRQKGGNSG FLAPLPLSDA LVKFLNIEES ALSRAEVVKK IWEYIKQNNL QVCDLSPC

Best Arabidopsis Sequence Match ( AT1G49520.1 )
(BLAST)

001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE

Arabidopsis Description

At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.