Factsheet for VIT_15s0024g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	39.84	72.86
VIT_02s0087g00810.t01	Wine grape	mitochondrion	54.69	60.87
Solyc08g075400.2.1	Tomato	plastid	54.69	56.45
PGSC0003DMT400004968	Potato	plastid	53.91	55.65
GSMUA_Achr7P17340_001	Banana	mitochondrion	56.25	55.38
Os02t0130000-01	Rice	mitochondrion, plastid	52.34	51.15
AT3G03590.1	Thale cress	mitochondrion, plastid	55.47	49.65
CDY51761	Canola	mitochondrion	50.78	48.51
CDY50651	Canola	plastid	53.91	47.26
Zm00001d015127_P001	Maize	mitochondrion	43.75	47.06
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	46.09	45.38
Bra031985.1-P	Field mustard	mitochondrion	53.12	44.44
Zm00001d053979_P001	Maize	mitochondrion	45.31	43.28
TraesCS6B01G116900.1	Wheat	plastid	47.66	42.66
TraesCSU01G113700.1	Wheat	plastid	47.66	42.36
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	47.66	41.78
EES06225	Sorghum	mitochondrion	42.19	41.22
VIT_03s0091g00430.t01	Wine grape	plastid	41.41	36.55
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	47.66	30.05
VIT_03s0063g01070.t01	Wine grape	nucleus	27.34	28.0
HORVU6Hr1G015440.1	Barley	plastid	44.53	27.4
VIT_07s0197g00070.t01	Wine grape	nucleus	30.47	13.09
VIT_00s0187g00190.t01	Wine grape	cytosol	33.59	12.39
VIT_00s0187g00240.t01	Wine grape	nucleus	32.81	12.21
VIT_19s0090g01460.t01	Wine grape	cytosol	28.91	11.18

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100252274	wikigene:100252274	MapMan:35.2	UniProt:A5BKY5	EMBL:AM463047
ProteinID:CAN68050	ProteinID:CAN68050.1	ProteinID:CBI40013	ProteinID:CBI40013.3	EMBL:FN596748	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EntrezGene:LOC100252274	wikigene:LOC100252274	PFAM:PF02201
PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	TIGR:TC52030	TIGR:TC62053	UniParc:UPI0001521343	ArrayExpress:VIT_15s0024g00650	EnsemblPlantsGene:VIT_15s0024g00650
EnsemblPlants:VIT_15s0024g00650.t01	RefSeq:XP_002270166	RefSeq:XP_002270166.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:+:1102845..1105565

Molecular Weight (calculated)

13813.0 Da

IEP (calculated)

11.228

GRAVY (calculated)

-0.280

Length

128 amino acids

Sequence
(BLAST)

001: MSGIAMGFFK NSRVLLAAAR SSSSPAAATK KTPAPPRTAA KGPPRSGGIT KPVPVSPALR KFLGVPEASR AEAVKKIWEH IKLNNLQNPT NKREILCDEK
101: LKSVFEGKDK VGFLEIGKLL SHHFIKTV

Best Arabidopsis Sequence Match ( AT3G03590.1 )
(BLAST)

001: MSSVAAMVFR GARSLLAPAS RATSSLVSAG STKKPAAKPK AKAKPKPKAK SDSPAKKTPR STGIFKVTPV SPVLAQFLGT GETSRTDAIK GIWTYIKSHD
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA

Arabidopsis Description

At3g03590 [Source:UniProtKB/TrEMBL;Acc:Q9SS61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.