Factsheet for Zm00001d053979_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06225	Sorghum	mitochondrion	76.87	78.63
Zm00001d015127_P001	Maize	mitochondrion	69.4	78.15
Os02t0130000-01	Rice	mitochondrion, plastid	57.46	58.78
GSMUA_AchrUn_...	Banana	cytosol	30.6	58.57
VIT_02s0087g00810.t01	Wine grape	mitochondrion	41.79	48.7
GSMUA_Achr7P17340_001	Banana	mitochondrion	47.01	48.46
AT2G35605.1	Thale cress	mitochondrion	38.06	46.79
CDY12300	Canola	mitochondrion	32.09	46.24
KRH76467	Soybean	nucleus	45.52	46.21
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	50.0	45.89
AT1G31760.1	Thale cress	mitochondrion	38.06	45.54
VIT_15s0024g00650.t01	Wine grape	mitochondrion	43.28	45.31
CDY47689	Canola	mitochondrion	39.55	45.3
CDY49157	Canola	mitochondrion	31.34	45.16
TraesCSU01G113700.1	Wheat	plastid	48.51	45.14
Solyc08g005590.2.1	Tomato	nucleus	41.04	45.08
PGSC0003DMT400047544	Potato	plastid	41.04	45.08
CDY50950	Canola	mitochondrion	38.81	44.83
Bra033879.1-P	Field mustard	mitochondrion	38.81	44.83
Bra023201.1-P	Field mustard	mitochondrion	38.06	44.35
TraesCS6B01G116900.1	Wheat	plastid	47.01	44.06
KRH28989	Soybean	mitochondrion, plastid	43.28	43.94
AT3G03590.1	Thale cress	mitochondrion, plastid	46.27	43.36
PGSC0003DMT400004968	Potato	plastid	39.55	42.74
Solyc08g075400.2.1	Tomato	plastid	39.55	42.74
Zm00001d035321_P001	Maize	plastid	44.78	41.96
CDY51761	Canola	mitochondrion	41.04	41.04
Bra031985.1-P	Field mustard	mitochondrion	44.78	39.22
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	36.57	37.69
CDY50651	Canola	plastid	40.3	36.99
Zm00001d013221_P001	Maize	plastid	37.31	34.48
HORVU6Hr1G015440.1	Barley	plastid	47.01	30.29
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	40.3	26.6
Zm00001d034159_P002	Maize	cytosol	20.9	10.77
Zm00001d052873_P001	Maize	cytosol	26.87	8.47
Zm00001d013204_P001	Maize	nucleus	23.13	8.07
Zm00001d001937_P003	Maize	cytosol	23.13	7.21
Zm00001d026541_P001	Maize	cytosol	20.15	6.89

Protein Annotations

EMBL:BT035990	EnsemblPlants:Zm00001d053979_P001	EnsemblPlants:Zm00001d053979_T001	EnsemblPlantsGene:Zm00001d053979	Gene3D:1.10.245.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	PFAM:PF02201	ProteinID:AQK60901.1	SEG:seg	SMART:SM00151
SUPFAM:SSF47592	UniParc:UPI00017B6932	UniProt:B4FFV2	MapMan:35.2	:	:

Description

SWIB/MDM2 domain superfamily protein

Coordinates

chr4:-:244557959..244560095

Molecular Weight (calculated)

14006.2 Da

IEP (calculated)

11.284

GRAVY (calculated)

-0.099

Length

134 amino acids

Sequence
(BLAST)

001: MAAAARVFRG SLFLMSPAAG AKASAAKKAG AAAAAAAVAK KTEAATTKPR LPTGITKPMP VSDEFRRFAG GAPEVARSEA IKLIWAHIKA HGLQNPAKKT
101: EINCDATLKS LFGGRDKVGM LEINRLLNAH FPKN

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.