Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 7
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 37.4 | 70.0 |
| CDY12300 | Canola | mitochondrion | 42.75 | 60.22 |
| CDY49157 | Canola | mitochondrion | 41.98 | 59.14 |
| Zm00001d015127_P001 | Maize | mitochondrion | 53.44 | 58.82 |
| Zm00001d053979_P001 | Maize | mitochondrion | 58.78 | 57.46 |
| TraesCS6B01G116900.1 | Wheat | plastid | 61.83 | 56.64 |
| Bra023201.1-P | Field mustard | mitochondrion | 49.62 | 56.52 |
| EES06225 | Sorghum | mitochondrion | 56.49 | 56.49 |
| TraesCSU01G113700.1 | Wheat | plastid | 61.83 | 56.25 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 61.07 | 54.79 |
| CDY47689 | Canola | mitochondrion | 48.85 | 54.7 |
| Solyc08g005590.2.1 | Tomato | nucleus | 50.38 | 54.1 |
| GSMUA_Achr7P17340_001 | Banana | mitochondrion | 53.44 | 53.85 |
| CDY50950 | Canola | mitochondrion | 47.33 | 53.45 |
| Bra033879.1-P | Field mustard | mitochondrion | 47.33 | 53.45 |
| PGSC0003DMT400047544 | Potato | plastid | 49.62 | 53.28 |
| Solyc08g075400.2.1 | Tomato | plastid | 50.38 | 53.23 |
| PGSC0003DMT400004968 | Potato | plastid | 49.62 | 52.42 |
| VIT_15s0024g00650.t01 | Wine grape | mitochondrion | 51.15 | 52.34 |
| VIT_02s0087g00810.t01 | Wine grape | mitochondrion | 45.8 | 52.17 |
| AT2G35605.1 | Thale cress | mitochondrion | 42.75 | 51.38 |
| KRH76467 | Soybean | nucleus | 51.15 | 50.76 |
| KRH28989 | Soybean | mitochondrion, plastid | 50.38 | 50.0 |
| AT1G31760.1 | Thale cress | mitochondrion | 42.75 | 50.0 |
| CDY51761 | Canola | mitochondrion | 45.8 | 44.78 |
| GSMUA_Achr4P05700_001 | Banana | cytosol, mitochondrion | 43.51 | 43.85 |
| AT3G03590.1 | Thale cress | mitochondrion, plastid | 46.56 | 42.66 |
| Bra031985.1-P | Field mustard | mitochondrion | 48.85 | 41.83 |
| CDY50651 | Canola | plastid | 45.8 | 41.1 |
| HORVU6Hr1G015440.1 | Barley | plastid | 60.31 | 37.98 |
| Os03t0761000-01 | Rice | nucleus | 37.4 | 34.03 |
| GSMUA_Achr4P12450_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 41.22 | 26.6 |
| Os12t0507500-00 | Rice | plastid | 29.77 | 21.67 |
| Os08t0502800-01 | Rice | nucleus | 26.72 | 8.62 |
| Os04t0665500-01 | Rice | cytosol | 24.43 | 8.27 |
| Os03t0764450-00 | Rice | nucleus | 26.72 | 7.37 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | EntrezGene:4328187 | EMBL:AK106464 | ProteinID:BAD07734.1 | ProteinID:BAD07989.1 |
| ProteinID:BAF07695.1 | ProteinID:BAS76802.1 | ProteinID:EAZ21611.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | EnsemblPlantsGene:Os02g0130000 | EnsemblPlants:Os02t0130000-01 | PFAM:PF02201 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF8 |
| UniProt:Q6Z6Y2 | SMART:SM00151 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain |
| UniParc:UPI00002367C0 | RefSeq:XP_015622745.1 | SEG:seg | : | : | : |
Description
Similar to SWIb domain-containing protein (Fragment). (Os02t0130000-01)
Coordinates
chr2:-:1563426..1565446
Molecular Weight (calculated)
13721.8 Da
IEP (calculated)
11.148
GRAVY (calculated)
-0.167
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAARVFRG CRFLMAAAGG KRPASASASA SAAGAKVTKT EAAQAKEKRG IMQPVPVSDA LSRFAGGAPE MSRAGAVKLI WNHIKANGLQ NPANKREINC
101: DDKLKSLFAG KDKVGMMEIA KLLSPHFIKA N
101: DDKLKSLFAG KDKVGMMEIA KLLSPHFIKA N
001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA
101: LSQHFPKSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.