Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
21433289
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G108300.1 | Wheat | plastid | 53.89 | 63.4 |
| TraesCS5D01G115900.1 | Wheat | plastid | 53.89 | 63.4 |
| HORVU5Hr1G028290.1 | Barley | plastid | 53.33 | 62.75 |
| TraesCS5A01G105100.1 | Wheat | plastid | 53.33 | 61.94 |
| Zm00001d035321_P001 | Maize | plastid | 44.44 | 55.94 |
| EES17082 | Sorghum | plastid | 45.56 | 55.78 |
| CDX76269 | Canola | cytosol | 17.78 | 36.36 |
| GSMUA_Achr10P... | Banana | plastid | 26.67 | 34.04 |
| Os03t0761000-01 | Rice | nucleus | 27.22 | 34.03 |
| PGSC0003DMT400025339 | Potato | plastid | 25.56 | 33.58 |
| PGSC0003DMT400066526 | Potato | plastid | 26.67 | 33.1 |
| Solyc01g107330.2.1 | Tomato | plastid | 26.67 | 32.88 |
| PGSC0003DMT400059663 | Potato | plastid | 25.0 | 32.61 |
| VIT_03s0091g00430.t01 | Wine grape | plastid | 25.56 | 31.72 |
| CDX75421 | Canola | plastid | 23.89 | 31.16 |
| Bra011519.1-P | Field mustard | plastid | 23.89 | 31.16 |
| CDX72477 | Canola | plastid | 23.33 | 30.22 |
| CDY69869 | Canola | plastid | 22.78 | 29.93 |
| CDY45303 | Canola | plastid | 23.33 | 29.79 |
| Bra017644.1-P | Field mustard | plastid | 23.33 | 29.79 |
| Os02t0130000-01 | Rice | mitochondrion, plastid | 21.67 | 29.77 |
| KRH77941 | Soybean | nucleus | 22.78 | 29.5 |
| AT4G34290.1 | Thale cress | plastid | 23.33 | 29.17 |
| AT2G14880.1 | Thale cress | plastid | 22.78 | 29.08 |
| KRH27569 | Soybean | nucleus | 23.89 | 29.05 |
| Bra034617.1-P | Field mustard | cytosol | 7.78 | 16.67 |
| Os08t0502800-01 | Rice | nucleus | 17.22 | 7.64 |
| Os04t0665500-01 | Rice | cytosol | 16.11 | 7.49 |
| Os03t0764450-00 | Rice | nucleus | 18.33 | 6.95 |
Protein Annotations
| EnsemblPlants:Os12t0507500-00 | EnsemblPlantsGene:Os12g0507500 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain |
| PANTHER:PTHR13844 | PANTHER:PTHR13844:SF21 | PFAM:PF02201 | ProteinID:BAT17301.1 | SEG:seg | SUPFAM:SSF47592 |
| TMHMM:TMhelix | UniParc:UPI000393ADC3 | UniProt:A0A0P0YAG3 | MapMan:35.2 | : | : |
Description
Similar to SWIB/MDM2 domain containing protein, expressed. (Os12t0507500-00)
Coordinates
chr12:-:19492147..19492760
Molecular Weight (calculated)
19328.8 Da
IEP (calculated)
10.557
GRAVY (calculated)
0.223
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATATAAAI RSGELLACPM ALRRAAAPVA AAMSFRMGRA ATARAGRLAT RVRVRVVAAA EEGAAEGKSS GKKKRAASGI MKPKPISAEL REFVGGAEEL
101: PRTEALKIIW AHIKGNNLQV CHTPPTSSFP FSGVNFCFAL RELLGRRYYC TTVHSYGCNL YDSIESLFVA LWVVLLLIML
101: PRTEALKIIW AHIKGNNLQV CHTPPTSSFP FSGVNFCFAL RELLGRRYYC TTVHSYGCNL YDSIESLFVA LWVVLLLIML
001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQVT
101: DLQVT
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.