CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75421	Canola	plastid	90.91	57.97
CDY69869	Canola	plastid	89.77	57.66
CDX72477	Canola	plastid	89.77	56.83
CDY45303	Canola	plastid	89.77	56.03
AT2G14880.1	Thale cress	plastid	79.55	49.65
AT4G34290.1	Thale cress	plastid	80.68	49.31
Bra034617.1-P	Field mustard	cytosol	46.59	48.81
PGSC0003DMT400025339	Potato	plastid	69.32	44.53
PGSC0003DMT400059663	Potato	plastid	68.18	43.48
PGSC0003DMT400066526	Potato	plastid	71.59	43.45
Solyc01g107330.2.1	Tomato	plastid	71.59	43.15
VIT_03s0091g00430.t01	Wine grape	plastid	69.32	42.07
GSMUA_Achr10P...	Banana	plastid	67.05	41.84
GSMUA_Achr7P26330_001	Banana	plastid	65.91	41.43
KRH77941	Soybean	nucleus	62.5	39.57
GSMUA_Achr3P30180_001	Banana	plastid	62.5	39.29
KRH27569	Soybean	nucleus	63.64	37.84
CDY12300	Canola	mitochondrion	39.77	37.63
CDY49157	Canola	mitochondrion	39.77	37.63
Zm00001d035321_P001	Maize	plastid	57.95	35.66
CDY50950	Canola	mitochondrion	46.59	35.34
CDY47689	Canola	mitochondrion	46.59	35.04
EES17082	Sorghum	plastid	57.95	34.69
TraesCS5D01G115900.1	Wheat	plastid	57.95	33.33
TraesCS5B01G108300.1	Wheat	plastid	57.95	33.33
HORVU5Hr1G028290.1	Barley	plastid	56.82	32.68
TraesCS5A01G105100.1	Wheat	plastid	56.82	32.26
CDY51761	Canola	mitochondrion	47.73	31.34
CDY50651	Canola	plastid	47.73	28.77
Os12t0507500-00	Rice	plastid	36.36	17.78
CDY27449	Canola	nucleus	37.5	10.19
CDX76378	Canola	cytosol	37.5	9.68
CDX79150	Canola	nucleus	37.5	9.43
CDX98747	Canola	nucleus	37.5	9.04
CDX94096	Canola	nucleus	37.5	8.85
CDX92300	Canola	nucleus	32.95	6.42
CDX99270	Canola	nucleus	32.95	6.25

Protein Annotations

EnsemblPlants:CDX76269	EnsemblPlantsGene:GSBRNA2T00126628001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	ProteinID:CDX76269	ProteinID:CDX76269.1	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0004EEFF2A
MapMan:35.2	:	:	:	:	:

Description

BnaA08g11310D

Coordinates

chrLK031807:+:56072..56712

Molecular Weight (calculated)

10014.4 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.326

Length

88 amino acids

Sequence
(BLAST)

1: MVRAVTVTPR GITKTSPVSP EMKDVVGESV IPRTQALKRI WAYIKEHDLQ DPQDKKVIIC DEKLKKIFEG KDRDGFLEIA KLIGPHFL

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.