CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45303	Canola	plastid	97.84	96.45
Bra017644.1-P	Field mustard	plastid	96.4	95.04
CDX76269	Canola	cytosol	56.83	89.77
CDX75421	Canola	plastid	87.05	87.68
CDY69869	Canola	plastid	85.61	86.86
AT4G34290.1	Thale cress	plastid	82.73	79.86
AT2G14880.1	Thale cress	plastid	74.1	73.05
VIT_03s0091g00430.t01	Wine grape	plastid	64.03	61.38
PGSC0003DMT400025339	Potato	plastid	59.71	60.58
Solyc01g107330.2.1	Tomato	plastid	63.31	60.27
PGSC0003DMT400066526	Potato	plastid	62.59	60.0
PGSC0003DMT400059663	Potato	plastid	58.99	59.42
GSMUA_Achr10P...	Banana	plastid	53.96	53.19
KRH77941	Soybean	nucleus	50.36	50.36
GSMUA_Achr3P30180_001	Banana	plastid	48.92	48.57
GSMUA_Achr7P26330_001	Banana	plastid	48.2	47.86
KRH27569	Soybean	nucleus	50.36	47.3
CDY12300	Canola	mitochondrion	29.5	44.09
CDY49157	Canola	mitochondrion	28.78	43.01
HORVU5Hr1G028290.1	Barley	plastid	46.04	41.83
TraesCS5B01G108300.1	Wheat	plastid	46.04	41.83
TraesCS5D01G115900.1	Wheat	plastid	46.04	41.83
Zm00001d035321_P001	Maize	plastid	42.45	41.26
TraesCS5A01G105100.1	Wheat	plastid	45.32	40.65
CDY47689	Canola	mitochondrion	33.81	40.17
EES17082	Sorghum	plastid	41.73	39.46
CDY50950	Canola	mitochondrion	32.37	38.79
CDY51761	Canola	mitochondrion	34.53	35.82
CDY50651	Canola	plastid	33.81	32.19
Os12t0507500-00	Rice	plastid	30.22	23.33
CDY27449	Canola	nucleus	31.65	13.58
CDX79150	Canola	nucleus	33.81	13.43
CDX76378	Canola	cytosol	31.65	12.9
CDX98747	Canola	nucleus	33.09	12.6
CDX94096	Canola	nucleus	33.09	12.33
CDX92300	Canola	nucleus	23.74	7.3
CDX99270	Canola	nucleus	23.74	7.11

Protein Annotations

EnsemblPlants:CDX72477	EnsemblPlantsGene:GSBRNA2T00100003001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	ProteinID:CDX72477	ProteinID:CDX72477.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI0004EC9659	MapMan:35.2	:	:	:	:

Description

BnaC07g44990D

Coordinates

chrLK031796:+:1486741..1488106

Molecular Weight (calculated)

15410.7 Da

IEP (calculated)

10.725

GRAVY (calculated)

-0.339

Length

139 amino acids

Sequence
(BLAST)

001: MALSSATFST SLRVDTAPFR SSPSLRISPH PANLRMVRAV TSATAAASSE PSSTTKTREP RGIMKPRPVT PEMQDVVGES VIPRTQALKR IWAYIKEHDL
101: QDPQNKKVII CDEKLKKIFD GKDRVGFLEI AKLIGPHFL

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.