Factsheet for VIT_03s0091g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76269	Canola	cytosol	42.07	69.32
PGSC0003DMT400066526	Potato	plastid	68.97	68.97
Solyc01g107330.2.1	Tomato	plastid	68.28	67.81
PGSC0003DMT400025339	Potato	plastid	63.45	67.15
Bra011519.1-P	Field mustard	plastid	63.45	66.67
CDX75421	Canola	plastid	63.45	66.67
CDY69869	Canola	plastid	62.76	66.42
PGSC0003DMT400059663	Potato	plastid	62.76	65.94
CDY45303	Canola	plastid	62.76	64.54
AT2G14880.1	Thale cress	plastid	62.76	64.54
CDX72477	Canola	plastid	61.38	64.03
AT4G34290.1	Thale cress	plastid	63.45	63.89
Bra017644.1-P	Field mustard	plastid	62.07	63.83
GSMUA_Achr10P...	Banana	plastid	56.55	58.16
GSMUA_Achr3P30180_001	Banana	plastid	53.79	55.71
GSMUA_Achr7P26330_001	Banana	plastid	51.72	53.57
KRH77941	Soybean	nucleus	48.28	50.36
TraesCS5B01G108300.1	Wheat	plastid	52.41	49.67
TraesCS5D01G115900.1	Wheat	plastid	52.41	49.67
KRH27569	Soybean	nucleus	50.34	49.32
HORVU5Hr1G028290.1	Barley	plastid	51.72	49.02
TraesCS5A01G105100.1	Wheat	plastid	51.72	48.39
EES17082	Sorghum	plastid	47.59	46.94
Zm00001d035321_P001	Maize	plastid	46.21	46.85
VIT_02s0087g00810.t01	Wine grape	mitochondrion	35.86	45.22
Bra034617.1-P	Field mustard	cytosol	25.52	44.05
VIT_15s0024g00650.t01	Wine grape	mitochondrion	36.55	41.41
Os12t0507500-00	Rice	plastid	31.72	25.56
VIT_03s0063g01070.t01	Wine grape	nucleus	20.69	24.0
VIT_07s0197g00070.t01	Wine grape	nucleus	26.9	13.09
VIT_00s0187g00240.t01	Wine grape	nucleus	31.03	13.08
VIT_00s0187g00190.t01	Wine grape	cytosol	31.03	12.97
VIT_19s0090g01460.t01	Wine grape	cytosol	28.28	12.39

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100242279	wikigene:100242279	MapMan:35.2	EMBL:AM438966	ProteinID:CAN78429
ProteinID:CAN78429.1	ProteinID:CCB47719	ProteinID:CCB47719.1	UniProt:F6H677	EMBL:FN595242	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EntrezGene:LOC100242279	wikigene:LOC100242279	PFAM:PF02201
PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI00015CD837	ArrayExpress:VIT_03s0091g00430	EnsemblPlantsGene:VIT_03s0091g00430	EnsemblPlants:VIT_03s0091g00430.t01	unigene:Vvi.1160
RefSeq:XP_002272147	RefSeq:XP_002272147.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:6798217..6802152

Molecular Weight (calculated)

15987.6 Da

IEP (calculated)

10.931

GRAVY (calculated)

-0.216

Length

145 amino acids

Sequence
(BLAST)

001: MAMSLGVIST FFSGETASFS KSALSLTSLR HLPPPSPHTN LRLVRTVTSA AASKPPAAAT GKREPRGIMK PRRISPEMQD FLGVPEIPRT QALKQIWAYI
101: KQHNLQDPEN KKIIVCDEKL KSIFAGKDRV GFLEIAGLIN PHFLK

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.