Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75421 | Canola | plastid | 99.28 | 99.28 |
| CDY69869 | Canola | plastid | 95.65 | 96.35 |
| Bra017644.1-P | Field mustard | plastid | 86.96 | 85.11 |
| AT4G34290.1 | Thale cress | plastid | 84.78 | 81.25 |
| AT2G14880.1 | Thale cress | plastid | 75.36 | 73.76 |
| VIT_03s0091g00430.t01 | Wine grape | plastid | 66.67 | 63.45 |
| PGSC0003DMT400025339 | Potato | plastid | 61.59 | 62.04 |
| PGSC0003DMT400066526 | Potato | plastid | 64.49 | 61.38 |
| Solyc01g107330.2.1 | Tomato | plastid | 63.77 | 60.27 |
| PGSC0003DMT400059663 | Potato | plastid | 60.14 | 60.14 |
| GSMUA_Achr10P... | Banana | plastid | 55.07 | 53.9 |
| KRH77941 | Soybean | nucleus | 53.62 | 53.24 |
| Bra034617.1-P | Field mustard | cytosol | 31.16 | 51.19 |
| KRH27569 | Soybean | nucleus | 54.35 | 50.68 |
| GSMUA_Achr3P30180_001 | Banana | plastid | 50.0 | 49.29 |
| GSMUA_Achr7P26330_001 | Banana | plastid | 50.0 | 49.29 |
| EES17082 | Sorghum | plastid | 44.93 | 42.18 |
| Zm00001d035321_P001 | Maize | plastid | 43.48 | 41.96 |
| HORVU5Hr1G028290.1 | Barley | plastid | 46.38 | 41.83 |
| TraesCS5B01G108300.1 | Wheat | plastid | 46.38 | 41.83 |
| TraesCS5D01G115900.1 | Wheat | plastid | 46.38 | 41.83 |
| TraesCS5A01G105100.1 | Wheat | plastid | 45.65 | 40.65 |
| Bra023201.1-P | Field mustard | mitochondrion | 33.33 | 40.0 |
| Bra033879.1-P | Field mustard | mitochondrion | 31.88 | 37.93 |
| Bra031985.1-P | Field mustard | mitochondrion | 36.96 | 33.33 |
| Os12t0507500-00 | Rice | plastid | 31.16 | 23.89 |
| Bra020851.1-P | Field mustard | nucleus | 32.61 | 14.02 |
| Bra013614.1-P | Field mustard | nucleus | 34.06 | 13.09 |
| Bra019378.1-P | Field mustard | cytosol | 34.06 | 12.91 |
| Bra022384.1-P | Field mustard | nucleus | 25.36 | 7.76 |
Protein Annotations
| EnsemblPlants:Bra011519.1 | EnsemblPlants:Bra011519.1-P | EnsemblPlantsGene:Bra011519 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF8 | PFAM:PF02201 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | UniParc:UPI00025458BE |
| UniProt:M4D4W2 | MapMan:35.2 | : | : | : | : |
Description
AT4G34290 (E=2e-051) | SWIB complex BAF60b domain-containing protein
Coordinates
chrA01:-:1846387..1847213
Molecular Weight (calculated)
15345.0 Da
IEP (calculated)
10.667
GRAVY (calculated)
-0.165
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSTGIFST FLCVKTVPLR SSPFLRVSPP HPANLRMVRA VTSATAASSE PSATKTREPR GIMKPRPVSP EMQDVVGEPV IPRTQALKRI WAYIKEHDLQ
101: DPQDKKVIIC DEKLKKIFAG KDRVGFLEIA KLIGPHFL
101: DPQDKKVIIC DEKLKKIFAG KDRVGFLEIA KLIGPHFL
001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
Arabidopsis Description
SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.