Factsheet for Zm00001d035321_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 29575040

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17082	Sorghum	plastid	92.31	89.8
TraesCS5D01G115900.1	Wheat	plastid	77.62	72.55
TraesCS5B01G108300.1	Wheat	plastid	77.62	72.55
HORVU5Hr1G028290.1	Barley	plastid	76.22	71.24
TraesCS5A01G105100.1	Wheat	plastid	76.92	70.97
CDX76269	Canola	cytosol	35.66	57.95
PGSC0003DMT400066526	Potato	plastid	48.95	48.28
Solyc01g107330.2.1	Tomato	plastid	48.95	47.95
GSMUA_Achr10P...	Banana	plastid	46.15	46.81
Zm00001d015127_P001	Maize	mitochondrion	38.46	46.22
VIT_03s0091g00430.t01	Wine grape	plastid	46.85	46.21
PGSC0003DMT400025339	Potato	plastid	43.36	45.26
PGSC0003DMT400059663	Potato	plastid	43.36	44.93
Zm00001d053979_P001	Maize	mitochondrion	41.96	44.78
Os12t0507500-00	Rice	plastid	55.94	44.44
Zm00001d013221_P001	Maize	plastid	44.76	44.14
Bra011519.1-P	Field mustard	plastid	41.96	43.48
CDX75421	Canola	plastid	41.96	43.48
CDX72477	Canola	plastid	41.26	42.45
Bra034617.1-P	Field mustard	cytosol	24.48	41.67
CDY69869	Canola	plastid	39.86	41.61
CDY45303	Canola	plastid	40.56	41.13
AT2G14880.1	Thale cress	plastid	40.56	41.13
Bra017644.1-P	Field mustard	plastid	39.86	40.43
AT4G34290.1	Thale cress	plastid	39.16	38.89
KRH27569	Soybean	nucleus	37.76	36.49
KRH77941	Soybean	nucleus	34.97	35.97
Zm00001d034159_P002	Maize	cytosol	27.27	15.0
Zm00001d013204_P001	Maize	nucleus	29.37	10.94
Zm00001d052873_P001	Maize	cytosol	26.57	8.94
Zm00001d026541_P001	Maize	cytosol	23.78	8.67
Zm00001d001937_P003	Maize	cytosol	25.17	8.37

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100275998	MapMan:35.2	ProteinID:AQK78681.1	UniProt:B6T2N1	EMBL:BT065853
EMBL:EU959246	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	PFAM:PF02201
PANTHER:PTHR13844	PANTHER:PTHR13844:SF21	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI000182C706	EnsemblPlantsGene:Zm00001d035321	EnsemblPlants:Zm00001d035321_P001	EnsemblPlants:Zm00001d035321_T001	SEG:seg

Description

SWIB/MDM2 domain superfamily protein

Coordinates

chr6:+:21256645..21260184

Molecular Weight (calculated)

15317.0 Da

IEP (calculated)

11.092

GRAVY (calculated)

-0.158

Length

143 amino acids

Sequence
(BLAST)

001: MSVAIRSGEL LACPVALRRA PLAVSVVSVR MRARGAVAVR AEATAEGVGK EGKKAAGKKK PASGITKPKP ISTELREFVG GAAELPRTEA IKLVWAHIKG
101: NNLQDPNNKK IIICDEKLKK IFGGRDRVGF LEISGLLNPH FQK

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.