Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76269 | Canola | cytosol | 48.81 | 46.59 |
| Bra011519.1-P | Field mustard | plastid | 51.19 | 31.16 |
| Bra017644.1-P | Field mustard | plastid | 50.0 | 29.79 |
| PGSC0003DMT400025339 | Potato | plastid | 47.62 | 29.2 |
| AT2G14880.1 | Thale cress | plastid | 48.81 | 29.08 |
| PGSC0003DMT400059663 | Potato | plastid | 47.62 | 28.99 |
| AT4G34290.1 | Thale cress | plastid | 47.62 | 27.78 |
| PGSC0003DMT400066526 | Potato | plastid | 47.62 | 27.59 |
| Solyc01g107330.2.1 | Tomato | plastid | 47.62 | 27.4 |
| Bra033879.1-P | Field mustard | mitochondrion | 35.71 | 25.86 |
| VIT_03s0091g00430.t01 | Wine grape | plastid | 44.05 | 25.52 |
| Bra023201.1-P | Field mustard | mitochondrion | 34.52 | 25.22 |
| Zm00001d035321_P001 | Maize | plastid | 41.67 | 24.48 |
| KRH77941 | Soybean | nucleus | 39.29 | 23.74 |
| GSMUA_Achr10P... | Banana | plastid | 39.29 | 23.4 |
| EES17082 | Sorghum | plastid | 40.48 | 23.13 |
| Bra031985.1-P | Field mustard | mitochondrion | 41.67 | 22.88 |
| TraesCS5B01G108300.1 | Wheat | plastid | 41.67 | 22.88 |
| TraesCS5D01G115900.1 | Wheat | plastid | 41.67 | 22.88 |
| KRH27569 | Soybean | nucleus | 39.29 | 22.3 |
| HORVU5Hr1G028290.1 | Barley | plastid | 40.48 | 22.22 |
| TraesCS5A01G105100.1 | Wheat | plastid | 40.48 | 21.94 |
| GSMUA_Achr7P26330_001 | Banana | plastid | 34.52 | 20.71 |
| GSMUA_Achr3P30180_001 | Banana | plastid | 32.14 | 19.29 |
| Os12t0507500-00 | Rice | plastid | 16.67 | 7.78 |
| Bra013614.1-P | Field mustard | nucleus | 29.76 | 6.96 |
| Bra020851.1-P | Field mustard | nucleus | 26.19 | 6.85 |
| Bra019378.1-P | Field mustard | cytosol | 25.0 | 5.77 |
| Bra022384.1-P | Field mustard | nucleus | 23.81 | 4.43 |
Protein Annotations
| EnsemblPlants:Bra034617.1 | EnsemblPlants:Bra034617.1-P | EnsemblPlantsGene:Bra034617 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF8 |
| PFAM:PF02201 | SEG:seg | SUPFAM:SSF47592 | UniParc:UPI00025463AE | UniProt:M4F0M2 | MapMan:35.2 |
Description
AT2G14880 (E=3e-014) | SWIB complex BAF60b domain-containing protein
Coordinates
chrA08:-:12502752..12503392
Molecular Weight (calculated)
9039.6 Da
IEP (calculated)
6.081
GRAVY (calculated)
-0.488
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRAVTVTVT VTSATASSEP ANQNPGAAWH HEDSSGVPGD EGHSGRDPQD KKVIICDEKL KKIFEGKDRD GFLEIAKLIG PHFL
001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.