Factsheet for Bra033879.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50950	Canola	mitochondrion	100.0	100.0
CDY47689	Canola	mitochondrion	94.83	94.02
Bra023201.1-P	Field mustard	mitochondrion	86.21	86.96
AT1G31760.1	Thale cress	mitochondrion	66.38	68.75
GSMUA_AchrUn_...	Banana	cytosol	37.07	61.43
PGSC0003DMT400047544	Potato	plastid	56.9	54.1
Solyc08g005590.2.1	Tomato	nucleus	56.9	54.1
KRH76467	Soybean	nucleus	56.9	50.0
GSMUA_Achr7P17340_001	Banana	mitochondrion	56.03	50.0
KRH28989	Soybean	mitochondrion, plastid	55.17	48.48
Os02t0130000-01	Rice	mitochondrion, plastid	53.45	47.33
Zm00001d015127_P001	Maize	mitochondrion	43.1	42.02
TraesCSU01G113700.1	Wheat	plastid	49.14	39.58
Zm00001d053979_P001	Maize	mitochondrion	44.83	38.81
TraesCS6B01G116900.1	Wheat	plastid	47.41	38.46
EES06225	Sorghum	mitochondrion	43.1	38.17
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	47.41	37.67
Bra031985.1-P	Field mustard	mitochondrion	47.41	35.95
Bra034617.1-P	Field mustard	cytosol	25.86	35.71
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	39.66	35.38
Bra017644.1-P	Field mustard	plastid	38.79	31.91
Bra011519.1-P	Field mustard	plastid	37.93	31.88
HORVU6Hr1G015440.1	Barley	plastid	49.14	27.4
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.66	22.66
Bra020851.1-P	Field mustard	nucleus	31.03	11.21
Bra013614.1-P	Field mustard	nucleus	29.31	9.47
Bra019378.1-P	Field mustard	cytosol	29.31	9.34
Bra022384.1-P	Field mustard	nucleus	28.45	7.32

Protein Annotations

EnsemblPlants:Bra033879.1	EnsemblPlants:Bra033879.1-P	EnsemblPlantsGene:Bra033879	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0002547336
UniProt:M4EYI7	MapMan:35.2	:	:	:	:

Description

AT2G35605 (E=2e-030) | SWIB complex BAF60b domain-containing protein

Coordinates

chrA05:+:14757806..14758910

Molecular Weight (calculated)

12287.8 Da

IEP (calculated)

10.448

GRAVY (calculated)

-0.214

Length

116 amino acids

Sequence
(BLAST)

001: MSAVSRVFGG CRTLMAKATT NAAAAASGGA AKEGKGILKT VPVSQTLANF AGESELSRAT AVKKVWEHIK GNNLQNPENR KQIICDDKLK TIFGDKDTVG
101: FTEIAKLLSP HFPKSV

Best Arabidopsis Sequence Match ( AT1G31760.1 )
(BLAST)

001: MAGISRVLGG FRTLMSKAAT VEAVTVAGEG KGIFKTRPVS QQLASFAGER ELTRGSALKK VWEYVKLHNL QNPANKKEIH CDDKLKTIFD GKDKVGITEI
101: MKLLSPHFPK SV

Arabidopsis Description

At1g31760 [Source:UniProtKB/TrEMBL;Acc:Q9C504]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.