Factsheet for Solyc08g005590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047544	Potato	plastid	94.26	94.26
Solyc08g075400.2.1	Tomato	plastid	68.85	67.74
CDY12300	Canola	mitochondrion	50.0	65.59
CDY49157	Canola	mitochondrion	50.0	65.59
GSMUA_AchrUn_...	Banana	cytosol	36.07	62.86
AT2G35605.1	Thale cress	mitochondrion	55.74	62.39
Bra023201.1-P	Field mustard	mitochondrion	57.38	60.87
CDY47689	Canola	mitochondrion	54.92	57.27
Bra033879.1-P	Field mustard	mitochondrion	54.1	56.9
CDY50950	Canola	mitochondrion	54.1	56.9
AT1G31760.1	Thale cress	mitochondrion	50.82	55.36
GSMUA_Achr7P17340_001	Banana	mitochondrion	57.38	53.85
KRH76467	Soybean	nucleus	58.2	53.79
KRH28989	Soybean	mitochondrion, plastid	57.38	53.03
Os02t0130000-01	Rice	mitochondrion, plastid	54.1	50.38
Zm00001d015127_P001	Maize	mitochondrion	43.44	44.54
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	46.72	43.85
EES06225	Sorghum	mitochondrion	44.26	41.22
Zm00001d053979_P001	Maize	mitochondrion	45.08	41.04
TraesCSU01G113700.1	Wheat	plastid	46.72	39.58
TraesCS6B01G116900.1	Wheat	plastid	45.9	39.16
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	45.9	38.36
Solyc01g107330.2.1	Tomato	plastid	43.44	36.3
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	49.18	29.56
HORVU6Hr1G015440.1	Barley	plastid	45.9	26.92
Solyc01g108290.2.1	Tomato	nucleus	35.25	12.91
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	29.51	12.63
Solyc11g012290.1.1	Tomato	cytosol	28.69	9.75

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR036885	UniProt:K4CI50
PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf
InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	EnsemblPlantsGene:Solyc08g005590.2	EnsemblPlants:Solyc08g005590.2.1	UniParc:UPI000276BA68	SEG:seg

Description

No Description!

Coordinates

chr8:+:441919..444485

Molecular Weight (calculated)

13191.0 Da

IEP (calculated)

10.728

GRAVY (calculated)

-0.425

Length

122 amino acids

Sequence
(BLAST)

001: MASSSRVFGN YCRTLMAAAK NSAGKTPPAT TTTAAGKGRS KGILKPQPIS PALQKFVGTS EISRTDAVKK IWDYIKTNNL QNPANKKEIN CDDMLKTIFA
101: GKDKVGFLEI AKLLSNHFQK AS

Best Arabidopsis Sequence Match ( AT2G35605.1 )
(BLAST)

001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.