Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066349 | Potato | cytosol | 94.29 | 93.45 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 10.81 | 56.25 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 53.15 | 56.01 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 20.72 | 55.2 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 38.44 | 44.91 |
| Solyc08g005590.2.1 | Tomato | nucleus | 12.91 | 35.25 |
| Solyc11g012290.1.1 | Tomato | cytosol | 30.63 | 28.41 |
| Solyc08g075400.2.1 | Tomato | plastid | 10.51 | 28.23 |
| Solyc01g107330.2.1 | Tomato | plastid | 11.71 | 26.71 |
Protein Annotations
| EnsemblPlants:Solyc01g108290.2.1 | EnsemblPlantsGene:Solyc01g108290.2 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DEK_C | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF23 | PFAM:PF02201 | PFAM:PF08766 | SEG:seg | SMART:SM00151 | SUPFAM:SSF109715 |
| SUPFAM:SSF47592 | UniParc:UPI0002768245 | UniProt:K4B345 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1:+:95644935..95649201
Molecular Weight (calculated)
38315.2 Da
IEP (calculated)
5.051
GRAVY (calculated)
-0.962
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDSVLVDR LREILRVSDL DIATAGTVRR RLEEEFGVDL LDRKAFIRDQ IDLFLRNQVE ETSKNDVHEE ENEKEGENDD SCSQEEEQES KEDENGDSCS
101: QEEEEGEDDS AKRAKKKPRS EKMNGEAKKK GGFNKPCALS PQLQKLVGEP ELGRPEVVKK IWAYIREKNL QNPENKRKIL CDEVLSGIFQ VKSIDMFQMN
201: KVLSKHIWPL NEENGTQVKT SVKRRLPKKG REEDSDEPKQ KEKRQKGGGS GFLAPVQLSD ALVKFLGIDE NALPRADVIK RIWQYIKENE LQDPSDKKTI
301: ICDERLKELF QVDSFHGFTV TKLLTAHFIK RED
101: QEEEEGEDDS AKRAKKKPRS EKMNGEAKKK GGFNKPCALS PQLQKLVGEP ELGRPEVVKK IWAYIREKNL QNPENKRKIL CDEVLSGIFQ VKSIDMFQMN
201: KVLSKHIWPL NEENGTQVKT SVKRRLPKKG REEDSDEPKQ KEKRQKGGGS GFLAPVQLSD ALVKFLGIDE NALPRADVIK RIWQYIKENE LQDPSDKKTI
301: ICDERLKELF QVDSFHGFTV TKLLTAHFIK RED
001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE
Arabidopsis Description
At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.